View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_481 (Length: 231)

Name: NF11737A_low_481
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_481
NF11737A_low_481
[»] chr3 (3 HSPs)
chr3 (5-225)||(53984804-53985024)
chr3 (5-222)||(53971099-53971315)
chr3 (161-217)||(53071908-53071964)
[»] chr4 (1 HSPs)
chr4 (161-222)||(34036297-34036358)
[»] chr2 (1 HSPs)
chr2 (161-225)||(6688093-6688157)
[»] chr1 (1 HSPs)
chr1 (162-222)||(16163998-16164058)
[»] chr7 (3 HSPs)
chr7 (161-202)||(19935380-19935421)
chr7 (161-202)||(19966519-19966560)
chr7 (161-208)||(31014482-31014529)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 53984804 - 53985024
Alignment:
Q  5 atgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagacgtgt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984804 atgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagacgtgt 53984903  T
Q  105 gtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatgttga 204  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984904 gtagaggtagatttaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatgttga 53985003  T
Q  205 agcacgtctagcatccacttc 225  Q
    |||||||||||||||||||||    
T  53985004 agcacgtctagcatccacttc 53985024  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 53971099 - 53971315
Alignment:
Q  5 atgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagacgtgt 104  Q
    ||||||| || ||||||| ||||||||| |  |||||| |||||||||||||||||| ||| || ||||  ||||||| |||||| | | |||||| |||    
T  53971099 atgaaatacatgtcggaacattttgtgggtcctgccaattgtcctcataaattccatcctccatctcctacaataagacggagggggtagtaagacatgt 53971198  T
Q  105 gtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcata-tcttaaacctgatgaatggtaagatgttgaagtttgggactatgttg 203  Q
      ||||||| || ||||||||||||||||||| |||||||||||| |||||| | | | ||||||||||||||||||||||||||||| ||||||||||     
T  53971199 --agaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggactatgtta 53971296  T
Q  204 aagcacgtctagcatccac 222  Q
     ||||||||||||||||||    
T  53971297 gagcacgtctagcatccac 53971315  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 53071964 - 53071908
Alignment:
Q  161 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagca 217  Q
    |||||| ||||||| ||||||||||||| || ||||| ||||||||||  |||||||    
T  53071964 aaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagca 53071908  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 34036358 - 34036297
Alignment:
Q  161 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccac 222  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||  ||||||||||||    
T  34036358 aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctagcatccac 34036297  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 6688157 - 6688093
Alignment:
Q  161 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttc 225  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||  |||| ||||||||||    
T  6688157 aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctaccatccacttc 6688093  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 16163998 - 16164058
Alignment:
Q  162 aacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccac 222  Q
    |||||||||||||| |||||||| ||| ||||| || ||||||||||| ||||||||||||    
T  16163998 aacctgatgaatggcaagatgttcaagcttgggcctctgttgaagcacttctagcatccac 16164058  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 19935421 - 19935380
Alignment:
Q  161 aaacctgatgaatggtaagatgttgaagtttgggactatgtt 202  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  19935421 aaacctgatgaatggtaagattttgaagtttgggacaatgtt 19935380  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 19966560 - 19966519
Alignment:
Q  161 aaacctgatgaatggtaagatgttgaagtttgggactatgtt 202  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  19966560 aaacctgatgaatggtaagattttgaagtttgggacaatgtt 19966519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 31014529 - 31014482
Alignment:
Q  161 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagca 208  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||    
T  31014529 aaaccttatgaatgataagatgttgaagcttgggactgtgttgaagca 31014482  T

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