View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_484 (Length: 231)

Name: NF11737A_low_484
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_484
NF11737A_low_484
[»] chr1 (5 HSPs)
chr1 (25-214)||(32351183-32351371)
chr1 (23-191)||(5499113-5499280)
chr1 (140-183)||(25502875-25502918)
chr1 (107-180)||(26740253-26740326)
chr1 (143-183)||(13862365-13862405)
[»] chr7 (2 HSPs)
chr7 (23-214)||(13442157-13442347)
chr7 (140-183)||(45994791-45994834)
[»] chr4 (6 HSPs)
chr4 (23-215)||(8486068-8486260)
chr4 (113-189)||(34978111-34978187)
chr4 (140-183)||(19649910-19649953)
chr4 (110-162)||(8811490-8811542)
chr4 (143-214)||(11585038-11585109)
chr4 (140-180)||(20397780-20397820)
[»] chr8 (4 HSPs)
chr8 (23-191)||(16373977-16374144)
chr8 (113-191)||(36159341-36159419)
chr8 (140-183)||(4985947-4985990)
chr8 (143-191)||(8302021-8302069)
[»] chr6 (2 HSPs)
chr6 (23-203)||(15675931-15676110)
chr6 (19-90)||(26207418-26207489)
[»] chr5 (1 HSPs)
chr5 (113-180)||(6051428-6051495)
[»] chr3 (3 HSPs)
chr3 (143-183)||(10620545-10620585)
chr3 (149-195)||(8132197-8132243)
chr3 (143-191)||(16186528-16186576)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 32351371 - 32351183
Alignment:
Q  25 tctaccaccaccccatcaacagaaatagaacacaaagcattatggcggcgcctagaagacatcaaatagtgnnnnnnntttcgagttggcatcaccatca 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||       ||||||||| ||||||||||||    
T  32351371 tctaccaccaccccatcaacagaaatagaacacaaagcattatggcggcgcctagaagacatctaagagtgaaaaaa-tttcgagttagcatcaccatca 32351273  T
Q  125 cgcaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagattgaatatttgttgcaataccacgcatctca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32351272 cgcaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagattgaatatctgttgcaataccacgcatctca 32351183  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 23 - 191
Target Start/End: Original strand, 5499113 - 5499280
Alignment:
Q  23 cctctaccaccaccccatcaacagaaatagaacacaaagcattatggcggcgcctagaagacatcaaatagtgnnnnnnntttcgagttggcatcaccat 122  Q
    |||| |||||| ||||||  ||| |||||||||||   |||||||| ||||||||||||||||||||| | ||       ||| ||||||||||||||||    
T  5499113 cctcaaccaccgccccattgacaaaaatagaacacggggcattatgacggcgcctagaagacatcaaagaatgaaaaaa-tttggagttggcatcaccat 5499211  T
Q  123 cacgcaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagattgaatat 191  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||    
T  5499212 cacgcaaccaacgcacccgagactgttgccaacaaatactagagttaagacgggacagagattgaatat 5499280  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 25502918 - 25502875
Alignment:
Q  140 cgagactgttgccaacaaatactagcattaagacgggacaaaga 183  Q
    |||||||||| |||||||||||||| ||||||||||| ||||||    
T  25502918 cgagactgtttccaacaaatactagtattaagacgggtcaaaga 25502875  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 26740253 - 26740326
Alignment:
Q  107 gagttggcatcaccatcacgcaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaa 180  Q
    ||||| ||||| || |||||||||||  | || || ||||| ||||||||||||||||  ||||||||||||||    
T  26740253 gagttagcatctccttcacgcaaccactgaacccgggactgctgccaacaaatactagtgttaagacgggacaa 26740326  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 13862405 - 13862365
Alignment:
Q  143 gactgttgccaacaaatactagcattaagacgggacaaaga 183  Q
    |||||||||||||||||||||| ||||| ||| ||||||||    
T  13862405 gactgttgccaacaaatactagtattaatacgagacaaaga 13862365  T

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Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 13442157 - 13442347
Alignment:
Q  23 cctctaccaccaccccatcaacagaaatagaacacaaagcattatggcggcgcctagaagacatcaaatagtgnnnnnnntttcgagttggcatcaccat 122  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||| ||||||||||    
T  13442157 cctctaccaccaccctatcaacagaaatagaacacaaagcattatggcggcgcctagaagacatcaaagagtgaaaaaa-tttcgagttagcatcaccat 13442255  T
Q  123 cacgcaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagattgaatatttgttgcaataccacgcatctca 214  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13442256 cactcaaccaacgcactcgagactgctgccaacaaatactagcattaagacgggacaaagattgaatatctgttgcaataccacgcatctca 13442347  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 45994791 - 45994834
Alignment:
Q  140 cgagactgttgccaacaaatactagcattaagacgggacaaaga 183  Q
    |||||||||||||||||||| |||| ||||||||||||||||||    
T  45994791 cgagactgttgccaacaaatgctagtattaagacgggacaaaga 45994834  T

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Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 23 - 215
Target Start/End: Complemental strand, 8486260 - 8486068
Alignment:
Q  23 cctctaccaccaccccatcaacagaaatagaacacaaagcattatggcggcgcctagaagacatcaaatagtgnnnnnnntttcgagttggcatcaccat 122  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||       |||  |||||||||||||||    
T  8486260 cctctaccaccaccccatcaacagaaatagaacacaaggcattatggcggcgcctagaagacatcaaagagtgaattttttttgtagttggcatcaccat 8486161  T
Q  123 cacgcaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagattgaatatttgttgcaataccacgcatctcat 215  Q
    |||||| ||||||||||| | ||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||    
T  8486160 cacgcagccaacgcactcaaaactgttgccaacatatactagcattaagacaggacaaagattgaatatctgttgcaatactacgcacctcat 8486068  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 34978111 - 34978187
Alignment:
Q  113 gcatcaccatcacgcaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagattgaat 189  Q
    ||||||||||||||||||||  | || || ||||||||||||||||||||||  ||||| |||||||| || |||||    
T  34978111 gcatcaccatcacgcaaccactggacccgggactgttgccaacaaatactagtgttaaggcgggacaaggaatgaat 34978187  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 19649910 - 19649953
Alignment:
Q  140 cgagactgttgccaacaaatactagcattaagacgggacaaaga 183  Q
    |||||||||| |||||||||||||| ||||||||||||||||||    
T  19649910 cgagactgtttccaacaaatactagtattaagacgggacaaaga 19649953  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 8811542 - 8811490
Alignment:
Q  110 ttggcatcaccatcacgcaaccaacgcactcgagactgttgccaacaaatact 162  Q
    |||||||| || |||||||||||  ||| ||||||||||||||||||||||||    
T  8811542 ttggcatccccttcacgcaaccactgcaatcgagactgttgccaacaaatact 8811490  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 11585109 - 11585038
Alignment:
Q  143 gactgttgccaacaaatactagcattaagacgggacaaagattgaatatttgttgcaataccacgcatctca 214  Q
    ||||||||||||||||||||||  |||||||| || || || ||||||| ||||| ||||||| | ||||||    
T  11585109 gactgttgccaacaaatactagtgttaagacgagataaggagtgaatatctgttgaaataccatgaatctca 11585038  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 20397780 - 20397820
Alignment:
Q  140 cgagactgttgccaacaaatactagcattaagacgggacaa 180  Q
    |||||||| |||||||||||||||| |||||| ||||||||    
T  20397780 cgagactgctgccaacaaatactagtattaaggcgggacaa 20397820  T

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Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 16374144 - 16373977
Alignment:
Q  23 cctctaccaccaccccatcaacagaaatagaacacaaagcattatggcggcgcctagaagacatcaaatagtgnnnnnnntttcgagttggcatcaccat 122  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||       ||||||||||||||| ||||    
T  16374144 cctcaaccaccaccccatcaacagaaatagaacacaaggcattatggcggcgcctagaagacatcaaagagtgaaaaaa-tttcgagttggcatccccat 16374046  T
Q  123 cacgcaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagattgaatat 191  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||    
T  16374045 cacgtaaccaacgcactcgagactattgccaacaaatactagcattaagacgggacaacgaatgaatat 16373977  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 36159341 - 36159419
Alignment:
Q  113 gcatcaccatcacgcaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagattgaatat 191  Q
    ||||||||||||||||||||  | || || ||||||||||| |||||||||| |||||| |||||||| || |||||||    
T  36159341 gcatcaccatcacgcaaccactgaacccgggactgttgccagcaaatactagtattaagtcgggacaaggaatgaatat 36159419  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 4985990 - 4985947
Alignment:
Q  140 cgagactgttgccaacaaatactagcattaagacgggacaaaga 183  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  4985990 cgagactgttgccaacaaatactagtattaagacgggtcaaaga 4985947  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 8302021 - 8302069
Alignment:
Q  143 gactgttgccaacaaatactagcattaagacgggacaaagattgaatat 191  Q
    ||||| |||||||||||||| | ||||||||| |||||||| |||||||    
T  8302021 gactgctgccaacaaatacttgtattaagacgagacaaagaatgaatat 8302069  T

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Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 15675931 - 15676110
Alignment:
Q  23 cctctaccaccaccccatcaacagaaatagaacacaaagcattatggcggcgcctagaagacatcaaatagtgnnnnnnntttcgagttggcatcaccat 122  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||       |||||| |||||||||||||    
T  15675931 cctctaccaccaccccatcaacagaaatagaacacaaggcattatggcggcgcctagaagacagcaaagagtgaaaaaa-tttcgaattggcatcaccat 15676029  T
Q  123 cacgcaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaaagattgaatatttgttgcaatac 203  Q
    |||||| |||  |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||    
T  15676030 cacgcagccactgcactcgagattgttgccaacaaatactagcattaagacaggacaaagattgaatatctgtcgcaatac 15676110  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 26207418 - 26207489
Alignment:
Q  19 acatcctctaccaccaccccatcaacagaaatagaacacaaagcattatggcggcgcctagaagacatcaaa 90  Q
    |||||||| |||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  26207418 acatcctcaaccaccgccccatcgacagaaatagaacacaaggcattatgacggcgcctagaagacatcaaa 26207489  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 6051428 - 6051495
Alignment:
Q  113 gcatcaccatcacgcaaccaacgcactcgagactgttgccaacaaatactagcattaagacgggacaa 180  Q
    ||||| || |||||||||||| | || ||||||||||||||||||||||||| |||||||||||||||    
T  6051428 gcatctccttcacgcaaccaatgaacccgagactgttgccaacaaatactagtattaagacgggacaa 6051495  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 10620585 - 10620545
Alignment:
Q  143 gactgttgccaacaaatactagcattaagacgggacaaaga 183  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  10620585 gactgctgccaacaaatactagtattaagacgggacaaaga 10620545  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 8132197 - 8132243
Alignment:
Q  149 tgccaacaaatactagcattaagacgggacaaagattgaatatttgt 195  Q
    |||||||||||||||| ||||||||||||||| || || ||||||||    
T  8132197 tgccaacaaatactagtattaagacgggacaacgaatggatatttgt 8132243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 16186528 - 16186576
Alignment:
Q  143 gactgttgccaacaaatactagcattaagacgggacaaagattgaatat 191  Q
    |||||||||||||| || |||| ||||||||| |||||||| |||||||    
T  16186528 gactgttgccaacagatgctagtattaagacgcgacaaagagtgaatat 16186576  T

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