View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_485 (Length: 231)
Name: NF11737A_low_485
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_485 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 13994721 - 13994609
Alignment:
| Q |
14 |
gacatcatgctaatattattattcataacaatgattatatttttaccggttttggtaattttatgggaatctaaaaagtgtattgtctttctacttttgg |
113 |
Q |
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| T |
13994721 |
gacatcatgctaatattattattcataacaatgattatatttttaccggttttggtaattttatgggaatctaaaaagtgtattgtctttctacttttgg |
13994622 |
T |
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| Q |
114 |
tcaaaaattaatg |
126 |
Q |
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| T |
13994621 |
tcaaaaattaatg |
13994609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 13981848 - 13981737
Alignment:
| Q |
44 |
atgattatatttttaccggttttggtaattttatgggaatctaaaaagtgtattgtctttctacttttggtcaaaaattaatgattatttatgtagtagc |
143 |
Q |
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| T |
13981848 |
atgattatatttttaccagttttggtaattttatgggaatctaaaaagtgtatcttcttgctacttttggtcaaaaagtaatgattatttatgtcgtagc |
13981749 |
T |
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| Q |
144 |
ccaaaaagaata |
155 |
Q |
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| T |
13981748 |
ccaaaaagaata |
13981737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 13993698 - 13993602
Alignment:
| Q |
115 |
caaaaattaatgattatttatgtagtagcccaaaaagaatatttcgacactaaagatactatannnnnnnactattacttttttcatcctatgttat |
211 |
Q |
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| T |
13993698 |
caaaaattaatgattatttatgtagtagcccaaaaagaatagttcgacactaaagatactatattttttaactattactttttccatcatatgttat |
13993602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 13993726 - 13993693
Alignment:
| Q |
117 |
aaaattaatgattatttatgtagtagcccaaaaa |
150 |
Q |
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| T |
13993726 |
aaaattaatgattatttatgtagtagcccaaaaa |
13993693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 14000025 - 13999997
Alignment:
| Q |
15 |
acatcatgctaatattattattcataaca |
43 |
Q |
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| T |
14000025 |
acatcatgctaatattattattcataaca |
13999997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 30735344 - 30735372
Alignment:
| Q |
15 |
acatcatgctaatattattattcataaca |
43 |
Q |
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| T |
30735344 |
acatcatgctaatattattattcataaca |
30735372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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