View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_489 (Length: 230)
Name: NF11737A_low_489
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_489 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 2658378 - 2658556
Alignment:
| Q |
14 |
atggacatcacgaccatgcctaaaaatacctaccacgtcccttggaagaaccactcccaacctaaccacctaaaaatcctataccccaccttcgatggca |
113 |
Q |
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| T |
2658378 |
atggacctcacaaccatgcctaaaaatacctaccacgtcccttggaagaaccactcccaacctaaccacctaaaaatcctataccccaccttcgatggca |
2658477 |
T |
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| Q |
114 |
ctccacatgtcacaacaagataattggcagattcgagtttcttacccccaaaaagtgcataaggaagccacctgatgtc |
192 |
Q |
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| T |
2658478 |
ctccacatgtcacaacaagataattggcagattcgagtttcttacccccaaaaagtgcataaggaagccacctgatgtc |
2658556 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 27099381 - 27099449
Alignment:
| Q |
70 |
ccaacctaaccacctaaaaatcctataccccaccttcgatggcactccacatgtcacaacaagataatt |
138 |
Q |
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| T |
27099381 |
ccaacctaaccacttaaaaatcctataccacaccttagaggccaccccacaagtaacaaaaagataatt |
27099449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 27178922 - 27178854
Alignment:
| Q |
70 |
ccaacctaaccacctaaaaatcctataccccaccttcgatggcactccacatgtcacaacaagataatt |
138 |
Q |
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| T |
27178922 |
ccaacctaaccacttaaaaatcctataccacaccttagaggccaccccacaagtaacaaaaagataatt |
27178854 |
T |
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