View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_49 (Length: 432)

Name: NF11737A_low_49
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_49
NF11737A_low_49
[»] chr7 (7 HSPs)
chr7 (10-273)||(2787119-2787380)
chr7 (309-430)||(2786989-2787109)
chr7 (306-389)||(38372525-38372608)
chr7 (306-361)||(41677369-41677424)
chr7 (306-360)||(34922927-34922981)
chr7 (309-365)||(12473197-12473253)
chr7 (315-351)||(21249161-21249197)
[»] chr5 (13 HSPs)
chr5 (26-152)||(19578230-19578356)
chr5 (315-391)||(11163314-11163390)
chr5 (309-393)||(26002960-26003044)
chr5 (306-375)||(29922225-29922294)
chr5 (303-383)||(17128251-17128331)
chr5 (311-383)||(27981953-27982025)
chr5 (311-393)||(16721990-16722072)
chr5 (303-381)||(24030190-24030268)
chr5 (309-347)||(36106778-36106816)
chr5 (303-351)||(7984110-7984158)
chr5 (306-375)||(12467245-12467314)
chr5 (306-374)||(1473338-1473406)
chr5 (309-389)||(15413959-15414039)
[»] chr3 (12 HSPs)
chr3 (316-389)||(21296733-21296806)
chr3 (314-393)||(23555447-23555526)
chr3 (305-375)||(24842142-24842212)
chr3 (324-365)||(29830824-29830865)
chr3 (306-389)||(22809229-22809313)
chr3 (321-389)||(50022007-50022075)
chr3 (306-353)||(5129851-5129898)
chr3 (315-390)||(10272088-10272163)
chr3 (311-365)||(28623275-28623329)
chr3 (315-365)||(30499957-30500007)
chr3 (303-349)||(42956212-42956258)
chr3 (331-387)||(47520426-47520482)
[»] chr8 (9 HSPs)
chr8 (307-393)||(13131393-13131479)
chr8 (306-353)||(1089016-1089063)
chr8 (334-393)||(2019713-2019772)
chr8 (315-370)||(11988183-11988238)
chr8 (308-375)||(16972395-16972462)
chr8 (306-388)||(32131408-32131490)
chr8 (303-352)||(13265488-13265537)
chr8 (309-373)||(19327850-19327914)
chr8 (315-391)||(42102072-42102148)
[»] chr4 (15 HSPs)
chr4 (309-391)||(18424316-18424398)
chr4 (309-352)||(46650275-46650318)
chr4 (315-389)||(29877606-29877680)
chr4 (303-384)||(43740108-43740189)
chr4 (311-359)||(22303093-22303141)
chr4 (311-391)||(47202791-47202871)
chr4 (335-391)||(48721942-48721998)
chr4 (306-389)||(23297405-23297488)
chr4 (315-389)||(43415334-43415408)
chr4 (311-365)||(46176019-46176073)
chr4 (306-391)||(948037-948122)
chr4 (324-393)||(10794963-10795032)
chr4 (309-382)||(29996678-29996751)
chr4 (326-387)||(31022371-31022432)
chr4 (307-375)||(8130469-8130537)
[»] chr6 (6 HSPs)
chr6 (311-391)||(32615455-32615535)
chr6 (313-390)||(21871193-21871269)
chr6 (315-375)||(28758366-28758426)
chr6 (315-365)||(4272373-4272423)
chr6 (315-365)||(22816630-22816680)
chr6 (306-391)||(21891374-21891459)
[»] chr2 (5 HSPs)
chr2 (306-383)||(33321439-33321516)
chr2 (306-391)||(4090454-4090539)
chr2 (315-360)||(12683651-12683696)
chr2 (332-389)||(17797329-17797386)
chr2 (309-365)||(34913429-34913485)
[»] chr1 (8 HSPs)
chr1 (324-393)||(16225472-16225541)
chr1 (303-375)||(26435208-26435279)
chr1 (306-389)||(1265729-1265812)
chr1 (315-390)||(35897668-35897743)
chr1 (304-351)||(41003392-41003439)
chr1 (309-390)||(15631870-15631951)
chr1 (306-383)||(35590103-35590180)
chr1 (303-388)||(39941343-39941423)
[»] scaffold0100 (1 HSPs)
scaffold0100 (311-365)||(38493-38547)
[»] scaffold0015 (1 HSPs)
scaffold0015 (326-392)||(48535-48601)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 2787380 - 2787119
Alignment:
Q  10 tggacatcaaagggaaatggatcaagttatggagagttttccattgatggttggaattgtttgtagcggtttgtttcttatttttccaacttcaaggcgt 109  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2787380 tggacatgaaagggaaatggatcaagttatggagagttttccattgatggttggaattgtttgtagcggtttgtttcttatttttccaacttcaaggcgt 2787281  T
Q  110 ggaattggatgcatgtctgcctaattttttagtatatatgtttgatttaatttgtatatttgtttgtacttttcttggtcgattatattatccattgacg 209  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2787280 ggaattggatgcatgtctgcctaattttttagt--atatgtttgatttaatttgtatatttgtttgtacttttcttggtcaattatattatccattgacg 2787183  T
Q  210 tttgtatcaaaataatcaatgtgaagtttatgtgatttaatattttatgatattttttgtatgc 273  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||    
T  2787182 tttgtatcaaaataatcaatgtgaagtttatgtaatttaatattttgtgatatttttcgtatgc 2787119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 309 - 430
Target Start/End: Complemental strand, 2787109 - 2786989
Alignment:
Q  309 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggacggttacttatttaca 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  2787109 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtata-tctaaaaaataagtcaattcaaacggacggttacttatttaca 2787011  T
Q  409 aaatggatttgattggaacttg 430  Q
    ||||||||||||||||||||||    
T  2787010 aaatggatttgattggaacttg 2786989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 38372608 - 38372525
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 389  Q
    |||||||| |||||||| |||||| | | |||||||||||||||||  ||||||| |||| || |||||| ||||||| |||||    
T  38372608 ttgacaaacttatgaataatacataagagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaac 38372525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 41677424 - 41677369
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgt 361  Q
    |||||||| |||||||| |||||| |||| ||||||||||||||||  ||||||||    
T  41677424 ttgacaaacttatgaataatacataaaaatttatttatttgcataagttgttttgt 41677369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 34922981 - 34922927
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttg 360  Q
    |||||||| |||||||| |||||| ||| |||||||||||||||||  |||||||    
T  34922981 ttgacaaacttatgaataatacataaaagcttatttatttgcataagttgttttg 34922927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 12473253 - 12473197
Alignment:
Q  309 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 365  Q
    ||||| |||||||| |||||| ||||||||||| |||||||||  ||||||| ||||    
T  12473253 acaaacttatgaataatacataaaaacttatttgtttgcataagttgttttgcataa 12473197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 21249197 - 21249161
Alignment:
Q  315 ttatgaatcatacatgaaaacttatttatttgcataa 351  Q
    |||||||| |||||| |||||||||||||||||||||    
T  21249197 ttatgaataatacataaaaacttatttatttgcataa 21249161  T

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Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 19578230 - 19578356
Alignment:
Q  26 atggatcaagttatggagagttttccattgatggttggaattgtttgtagcggtttgtttcttatttttccaacttcaaggcgtggaattggatgcatgt 125  Q
    |||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||    
T  19578230 atggatcaagttatggagagttttcctttgatggttggaataatttgtagcggtttgttccttatttttcctacttcaaggcatggaattggatgcatgt 19578329  T
Q  126 ctgcctaattttttagtatatatgttt 152  Q
    || |||||||| |||||||||||||||    
T  19578330 cttcctaatttattagtatatatgttt 19578356  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 391
Target Start/End: Original strand, 11163314 - 11163390
Alignment:
Q  315 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 391  Q
    ||||||||||||||| |||||||||| |||| |||||  ||||||| |||| ||||||||| ||||||| |||||||    
T  11163314 ttatgaatcatacataaaaacttattgatttacataagctgttttgcataagctaaaaaataagtcaatccaaacgg 11163390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 393
Target Start/End: Complemental strand, 26003044 - 26002960
Alignment:
Q  309 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 393  Q
    ||||| |||| ||| |||||| |||||||||||||||||||||| |||||||||||| ||  ||||| ||| ||| |||||||||    
T  26003044 acaaacttataaataatacataaaaacttatttatttgcataaactgttttgtataagctctaaaataagttaatccaaacggac 26002960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 29922225 - 29922294
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 375  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||| ||||||| |||| || ||||||    
T  29922225 ttgacaagcttatgaataatacataaaaacttatttatttgcataaactgttttgcataagctcaaaaat 29922294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 17128331 - 17128251
Alignment:
Q  303 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 383  Q
    ||||||| || ||||||||| |||||| ||| |||||||||||||||||  ||||||| |||| || |||||| |||||||    
T  17128331 actttgataagtttatgaataatacataaaagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaat 17128251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 383
Target Start/End: Original strand, 27981953 - 27982025
Alignment:
Q  311 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 383  Q
    |||||||||||| |||||| |||| |||||||||| ||||| |||||||||||||  | |||||| |||||||    
T  27981953 aaatttatgaataatacataaaaatttatttattttcataagatgttttgtataagttcaaaaataagtcaat 27982025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 16722072 - 16721990
Alignment:
Q  311 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 393  Q
    |||||||| ||| |||||| |||||||||||||||||||||| | |||| ||||| ||  ||||| ||  |||||||||||||    
T  16722072 aaatttataaataatacataaaaacttatttatttgcataaattattttctataagctttaaaataagctaattcaaacggac 16721990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 24030268 - 24030190
Alignment:
Q  303 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtca 381  Q
    ||||||||||  |||||||| |||||| ||| |||||||||||| ||||  |||||||||||| || |||||| |||||    
T  24030268 actttgacaagcttatgaataatacataaaagcttatttatttggataagctgttttgtataagcttaaaaataagtca 24030190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 36106778 - 36106816
Alignment:
Q  309 acaaatttatgaatcatacatgaaaacttatttatttgc 347  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  36106778 acaaatttatgaatcatacataaaaacttatttatttgc 36106816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 7984158 - 7984110
Alignment:
Q  303 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataa 351  Q
    ||||||||||| |||||||| |||||| |||||||| ||||||||||||    
T  7984158 actttgacaaacttatgaataatacataaaaacttagttatttgcataa 7984110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 12467314 - 12467245
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 375  Q
    |||||||  |||||||| |||||| ||| ||||||||||||||||| || ||||| |||| || ||||||    
T  12467314 ttgacaagcttatgaataatacataaaagcttatttatttgcataacattttttgaataaactcaaaaat 12467245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 1473406 - 1473338
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaa 374  Q
    |||||||  |||||||| |||||| ||| |||||||||||||||||  |||| ||||||| || |||||    
T  1473406 ttgacaagcttatgaataatacataaaagcttatttatttgcataagttgttctgtataagctcaaaaa 1473338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 15414039 - 15413959
Alignment:
Q  309 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 389  Q
    ||||| |||| ||| |||||| || ||||||||||||||||||  ||||||| |||| ||  ||||| ||||||| |||||    
T  15414039 acaaacttatcaataatacattaatacttatttatttgcataagctgttttgcataagctctaaaataagtcaatccaaac 15413959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 21296806 - 21296733
Alignment:
Q  316 tatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 389  Q
    ||||||| ||| || |||||||||||||||||||||| ||||||| ||||||| |||||| ||||||| |||||    
T  21296806 tatgaataatagataaaaacttatttatttgcataaattgttttgcataatctcaaaaataagtcaatccaaac 21296733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 393
Target Start/End: Complemental strand, 23555526 - 23555447
Alignment:
Q  314 tttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 393  Q
    |||| |||| |||||| ||| |||||||||||||||||| ||||| |||||| || |||||| || |||| |||||||||    
T  23555526 tttacgaataatacataaaagcttatttatttgcataaactgtttcgtataagctcaaaaataagccaatccaaacggac 23555447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 24842142 - 24842212
Alignment:
Q  305 tttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 375  Q
    ||||||||| |||||||| |||||| |||| ||||||||||||||||  |||||| ||||| || ||||||    
T  24842142 tttgacaaacttatgaataatacataaaaatttatttatttgcataagttgttttttataaccttaaaaat 24842212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 29830824 - 29830865
Alignment:
Q  324 atacatgaaaacttatttatttgcataaaatgttttgtataa 365  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  29830824 atacataaaaacttatttatttgcataaactgttttgtataa 29830865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 22809229 - 22809313
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaa-cttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 389  Q
    |||||||  |||||||| ||| || |||| |||||||||||||||||  ||||||| |||| || |||||| |||||||||||||    
T  22809229 ttgacaagcttatgaataatatataaaaagcttatttatttgcataagctgttttgcataacctcaaaaataagtcaattcaaac 22809313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 50022007 - 50022075
Alignment:
Q  321 atcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 389  Q
    ||||||||| ||| |||||||||||||||||| ||||||| |||||||  ||||| || |||| |||||    
T  50022007 atcatacatcaaagcttatttatttgcataaactgttttgcataatctctaaaataagccaatccaaac 50022075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 5129851 - 5129898
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaa 353  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||||    
T  5129851 ttgacaagcttatgaataatacattaaaacttatttatttgcataaaa 5129898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 10272163 - 10272088
Alignment:
Q  315 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 390  Q
    |||||||| |||||| |||  |||||||||||||| |  ||||||| |||| ||||||||| ||||||| ||||||    
T  10272163 ttatgaataatacataaaagtttatttatttgcatgagttgttttgcataagctaaaaaataagtcaatccaaacg 10272088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 365
Target Start/End: Original strand, 28623275 - 28623329
Alignment:
Q  311 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 365  Q
    |||||||| ||| |||||| |||||||||||||||||||||  |||||| |||||    
T  28623275 aaatttataaataatacataaaaacttatttatttgcataagttgttttctataa 28623329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 30500007 - 30499957
Alignment:
Q  315 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 365  Q
    |||| ||| |||||| |||| ||||||||||||||||| ||||||||||||    
T  30500007 ttataaataatacataaaaatttatttatttgcataaactgttttgtataa 30499957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 42956212 - 42956258
Alignment:
Q  303 actttgacaaatttatgaatcatacatgaaaacttatttatttgcat 349  Q
    |||| ||||| ||||||||| |||||| |||||||||||||||||||    
T  42956212 acttcgacaagtttatgaataatacataaaaacttatttatttgcat 42956258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 47520482 - 47520426
Alignment:
Q  331 aaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaa 387  Q
    ||||||||||||| |||||||| | |||| ||||| || |||||| |||||||||||    
T  47520482 aaaacttatttatatgcataaattattttttataaactcaaaaataagtcaattcaa 47520426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 393
Target Start/End: Complemental strand, 13131479 - 13131393
Alignment:
Q  307 tgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 393  Q
    ||||||| |||||||| |||||| ||| |||||||||||||||||  ||||||| |||| ||||||||| ||  ||| |||||||||    
T  13131479 tgacaaacttatgaataatacataaaagcttatttatttgcataatttgttttgcataagctaaaaaataagcaaatccaaacggac 13131393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 1089063 - 1089016
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaa 353  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||||    
T  1089063 ttgacaagcttatgaataatacattaaaacttatttatttgcataaaa 1089016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 2019713 - 2019772
Alignment:
Q  334 acttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 393  Q
    |||||||||||||||||| |||||||| |||| ||  ||||| ||||||| |||||||||    
T  2019713 acttatttatttgcataagatgttttgcataagctctaaaataagtcaatccaaacggac 2019772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 11988238 - 11988183
Alignment:
Q  315 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaa 370  Q
    |||| ||| |||||| |||||||||||||||||||||| |||||| ||||| ||||    
T  11988238 ttataaataatacataaaaacttatttatttgcataaattgttttatataagctaa 11988183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 375
Target Start/End: Original strand, 16972395 - 16972462
Alignment:
Q  308 gacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 375  Q
    |||||| |||||||| ||||||  || |||||||||||||| ||| ||||||| |||| |||||||||    
T  16972395 gacaaacttatgaataatacatacaagcttatttatttgcaaaaattgttttgcataagctaaaaaat 16972462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 32131490 - 32131408
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaa 388  Q
    |||||||| ||| |||| || ||| ||| |||||||||||||||||  ||||||| |||| || |||||| ||||||| ||||    
T  32131490 ttgacaaacttaggaataatgcataaaagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaa 32131408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 13265537 - 13265488
Alignment:
Q  303 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaa 352  Q
    ||||||||||  |||||||| |||||| ||| ||||||||||||||||||    
T  13265537 actttgacaagcttatgaataatacataaaagcttatttatttgcataaa 13265488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 19327914 - 19327850
Alignment:
Q  309 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaa 373  Q
    ||||| |||||||| |||||| |||  ||||||||||||||||  ||||||| |||| |||||||    
T  19327914 acaaacttatgaataatacataaaagtttatttatttgcataagttgttttgcataagctaaaaa 19327850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 391
Target Start/End: Complemental strand, 42102148 - 42102072
Alignment:
Q  315 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 391  Q
    |||| ||| |||||| |||||||||||||||||||||  |||||| ||||| ||  ||||| ||| ||| |||||||    
T  42102148 ttataaataatacataaaaacttatttatttgcataagctgttttatataagctctaaaataagttaatccaaacgg 42102072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 391
Target Start/End: Original strand, 18424316 - 18424398
Alignment:
Q  309 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 391  Q
    |||| ||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||| || ||||||  ||||||||||||||    
T  18424316 acaagtttatgaataatacataaaagcttatttatttgtataaattgttttgcataagctcaaaaatatgtcaattcaaacgg 18424398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 46650318 - 46650275
Alignment:
Q  309 acaaatttatgaatcatacatgaaaacttatttatttgcataaa 352  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  46650318 acaaatttatgaataatacatgaaagcttatttatttgcataaa 46650275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 389
Target Start/End: Complemental strand, 29877680 - 29877606
Alignment:
Q  315 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 389  Q
    |||||||| |||||| ||| |||||||||||||||||| ||||||| |||| || |||||| || |||| |||||    
T  29877680 ttatgaataatacataaaagcttatttatttgcataaattgttttgcataagctcaaaaataagccaatccaaac 29877606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 43740108 - 43740189
Alignment:
Q  303 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaatt 384  Q
    |||| ||||| ||||||||| |||  | ||||||||||||||| |||||| ||||||||||||  | |||||| ||||||||    
T  43740108 acttagacaagtttatgaataatatgtaaaaacttatttattttcataaattgttttgtataaatttaaaaataagtcaatt 43740189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 22303141 - 22303093
Alignment:
Q  311 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgtttt 359  Q
    |||||||| ||| |||||| |||||||||||||||||||||| ||||||    
T  22303141 aaatttataaataatacataaaaacttatttatttgcataaactgtttt 22303093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 391
Target Start/End: Complemental strand, 47202871 - 47202791
Alignment:
Q  311 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 391  Q
    |||||||| | | |||||| |||||||||||||||||||||  |||||| ||||| ||| ||||| ||| ||| |||||||    
T  47202871 aaatttataagtaatacataaaaacttatttatttgcataagctgttttatataagctataaaataagttaatccaaacgg 47202791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 48721942 - 48721998
Alignment:
Q  335 cttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 391  Q
    |||||||||||| ||||| | |||| ||||| ||||||||| |||||||||||||||    
T  48721942 cttatttatttgtataaattattttttataagctaaaaaataagtcaattcaaacgg 48721998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 23297488 - 23297405
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 389  Q
    |||||||| |||||||| |||||| ||| |||||||||||||||||  | ||||| |||| || |||||| || |||| |||||    
T  23297488 ttgacaaacttatgaataatacataaaagcttatttatttgcataagctattttgcataagctcaaaaataagccaatccaaac 23297405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 389
Target Start/End: Original strand, 43415334 - 43415408
Alignment:
Q  315 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 389  Q
    |||||||| |||||| |||||||||||||||||| ||  ||||||   ||| || |||||| |||||||||||||    
T  43415334 ttatgaataatacataaaaacttatttatttgcagaagttgttttacttaagctcaaaaataagtcaattcaaac 43415408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 365
Target Start/End: Original strand, 46176019 - 46176073
Alignment:
Q  311 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 365  Q
    |||||||| ||| |||||| |||||||||||||||||||||  |||||| |||||    
T  46176019 aaatttataaataatacataaaaacttatttatttgcataagctgttttatataa 46176073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 391
Target Start/End: Complemental strand, 948122 - 948037
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 391  Q
    |||||||| |||||||| |||||| ||| ||||||||||| |||||  | ||||| |||| ||||||| | ||||| | |||||||    
T  948122 ttgacaaagttatgaataatacataaaagcttatttattttcataagctattttgcataagctaaaaagtaagtcattccaaacgg 948037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 393
Target Start/End: Original strand, 10794963 - 10795032
Alignment:
Q  324 atacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 393  Q
    |||||| ||||||||||||||| || ||  ||||||| |||| ||  ||||| |||||||||||||||||    
T  10794963 atacataaaaacttatttatttacacaagctgttttgcataagctctaaaataagtcaattcaaacggac 10795032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 29996678 - 29996751
Alignment:
Q  309 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaa 382  Q
    ||||| |||||||| ||| || ||| |||||||||||||||||| ||||||| | || || |||||| ||||||    
T  29996678 acaaacttatgaataatatataaaagcttatttatttgcataaattgttttgcaaaaactcaaaaataagtcaa 29996751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 31022432 - 31022371
Alignment:
Q  326 acatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaa 387  Q
    |||| ||||||||||||||||||| | |||||||| |||| || |||||| || ||||||||    
T  31022432 acataaaaacttatttatttgcatgagatgttttgcataagctcaaaaataagacaattcaa 31022371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 8130537 - 8130469
Alignment:
Q  307 tgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 375  Q
    ||||||| |||||||| || ||| ||| |||||||||||||||||  ||||||| |||  |||||||||    
T  8130537 tgacaaacttatgaataatgcataaaagcttatttatttgcataagctgttttgcatatgctaaaaaat 8130469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 391
Target Start/End: Original strand, 32615455 - 32615535
Alignment:
Q  311 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 391  Q
    |||||||| ||| |||||| |||||||||||||||||||||  |||||| ||||| ||| ||||| ||| ||| |||||||    
T  32615455 aaatttataaataatacataaaaacttatttatttgcataagctgttttatataagctataaaataagttaatccaaacgg 32615535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 390
Target Start/End: Complemental strand, 21871269 - 21871193
Alignment:
Q  313 atttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 390  Q
    |||||||||||| |||| |||||||||||||||| ||||| | ||||  |||| ||||||||| ||||||| ||||||    
T  21871269 atttatgaatca-acataaaaacttatttatttgtataaactatttttcataagctaaaaaataagtcaatccaaacg 21871193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 28758366 - 28758426
Alignment:
Q  315 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 375  Q
    |||||||| |||||| |||| ||||||||||||||||| |||| ||||||  |||||||||    
T  28758366 ttatgaataatacataaaaatttatttatttgcataaactgttctgtatagactaaaaaat 28758426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 4272423 - 4272373
Alignment:
Q  315 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 365  Q
    ||||| || |||||| |||| ||||||||||||||||| ||||||||||||    
T  4272423 ttatgtataatacataaaaagttatttatttgcataaattgttttgtataa 4272373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 22816630 - 22816680
Alignment:
Q  315 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 365  Q
    ||||||||  ||||| |||||||||||||||||||||| |||||| |||||    
T  22816630 ttatgaatattacataaaaacttatttatttgcataaattgttttttataa 22816680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 391
Target Start/End: Original strand, 21891374 - 21891459
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 391  Q
    |||||||  |||||||| ||| || |||||||||||||||||||||  | || || |||| || |||||||| ||||| |||||||    
T  21891374 ttgacaagcttatgaataatatatcaaaacttatttatttgcataagctattctgcataagctcaaaaattaatcaatccaaacgg 21891459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 33321439 - 33321516
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 383  Q
    |||||||  |||||| | |||||| |||||||| ||||||||||||  ||||||| |||| ||||||||| |||||||    
T  33321439 ttgacaagcttatgagtaatacataaaaacttaattatttgcataagttgttttgcataagctaaaaaataagtcaat 33321516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 391
Target Start/End: Complemental strand, 4090539 - 4090454
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 391  Q
    |||||||  |||||||| |||||| |||  ||||||||||||||||  ||||||| |||| || |||||| || ||||||| ||||    
T  4090539 ttgacaagattatgaataatacatcaaagtttatttatttgcataagctgttttgcataagctcaaaaataagccaattcagacgg 4090454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 12683651 - 12683696
Alignment:
Q  315 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttg 360  Q
    |||||||| |||||| |||||||||||||||||||||  |||||||    
T  12683651 ttatgaataatacattaaaacttatttatttgcataatctgttttg 12683696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 17797329 - 17797386
Alignment:
Q  332 aaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 389  Q
    ||||||||||||||||||||| ||||||| ||||  |||||||| | ||||| |||||    
T  17797329 aaacttatttatttgcataaactgttttgcataagttaaaaaataaatcaatccaaac 17797386  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 34913429 - 34913485
Alignment:
Q  309 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 365  Q
    ||||| |||||||| |||||| ||| |||||||||||||||||  ||||||| ||||    
T  34913429 acaaacttatgaataatacataaaagcttatttatttgcataagctgttttgcataa 34913485  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 16225541 - 16225472
Alignment:
Q  324 atacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 393  Q
    |||||| ||||||||||||||| |||||| ||||||| |||| ||  ||||| ||||||| |||||||||    
T  16225541 atacataaaaacttatttatttacataaactgttttgcataagctctaaaataagtcaatccaaacggac 16225472  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 375
Target Start/End: Original strand, 26435208 - 26435279
Alignment:
Q  303 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 375  Q
    ||||||||||| |||  ||| |||||| |||||||||||||||||||||  |||||||||||| || ||||||    
T  26435208 actttgacaaacttaaaaataatacat-aaaacttatttatttgcataagctgttttgtataagctcaaaaat 26435279  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 1265729 - 1265812
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 389  Q
    |||||||| |||||||| |||||| ||| ||||| | |||| ||||  ||||||| |||| || |||||| |||||||||||||    
T  1265729 ttgacaaaattatgaataatacataaaatcttatctgtttgtataagttgttttgcataagctcaaaaataagtcaattcaaac 1265812  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 35897668 - 35897743
Alignment:
Q  315 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 390  Q
    |||||||| ||| || |||||||||||||||||||||  ||||||| |||| || |||||| | ||||| ||||||    
T  35897668 ttatgaataataaataaaaacttatttatttgcataagttgttttgcataaccttaaaaataaatcaatccaaacg 35897743  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 41003439 - 41003392
Alignment:
Q  304 ctttgacaaatttatgaatcatacatgaaaacttatttatttgcataa 351  Q
    |||||||||| |||| ||| |||||| |||||||||||||||||||||    
T  41003439 ctttgacaaacttataaataatacataaaaacttatttatttgcataa 41003392  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 390
Target Start/End: Complemental strand, 15631951 - 15631870
Alignment:
Q  309 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 390  Q
    ||||| |||| ||| |||||| |||||||||||||||| ||||  |||||||||||| ||  ||||| | | ||||||||||    
T  15631951 acaaacttataaataatacataaaaacttatttatttgtataagttgttttgtataagctctaaaataaattaattcaaacg 15631870  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 35590180 - 35590103
Alignment:
Q  306 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 383  Q
    |||||||  |||||||  |||||| ||| |||||||||||||||||  ||||||  |||| ||||||||| |||||||    
T  35590180 ttgacaagcttatgaactatacataaaagcttatttatttgcataagttgttttacataagctaaaaaataagtcaat 35590103  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 39941423 - 39941343
Alignment:
Q  303 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaa 388  Q
    ||||||||||  |||||||| |||||| |||||| ||||||||||     ||||||||| ||| || |||||| ||||||||||||    
T  39941423 actttgacaagcttatgaataatacataaaaactcatttatttgc-----atgttttgtttaagctgaaaaataagtcaattcaaa 39941343  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 365
Target Start/End: Original strand, 38493 - 38547
Alignment:
Q  311 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 365  Q
    |||||||| ||| |||||| |||||||||||||||||||||| | |||| |||||    
T  38493 aaatttataaataatacataaaaacttatttatttgcataaactattttatataa 38547  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 48601 - 48535
Alignment:
Q  326 acatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgga 392  Q
    |||| ||| |||||||||||||||||  | |||||||||| ||||||||| |||||||  |||||||    
T  48601 acataaaagcttatttatttgcataagctattttgtataagctaaaaaataagtcaatcaaaacgga 48535  T

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