View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_491 (Length: 230)

Name: NF11737A_low_491
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_491
NF11737A_low_491
[»] chr1 (5 HSPs)
chr1 (7-220)||(11351653-11351866)
chr1 (16-220)||(20639432-20639636)
chr1 (7-220)||(6784120-6784333)
chr1 (7-166)||(21515101-21515258)
chr1 (34-204)||(32988971-32989141)
[»] chr2 (3 HSPs)
chr2 (7-220)||(29894377-29894590)
chr2 (7-220)||(24543055-24543268)
chr2 (16-220)||(36364882-36365086)
[»] chr6 (1 HSPs)
chr6 (7-220)||(942535-942748)
[»] chr3 (7 HSPs)
chr3 (7-220)||(51976602-51976815)
chr3 (7-220)||(36684747-36684960)
chr3 (20-213)||(8705561-8705754)
chr3 (20-213)||(9057448-9057641)
chr3 (16-204)||(4978479-4978668)
chr3 (23-172)||(45736356-45736505)
chr3 (7-133)||(49758974-49759100)
[»] chr8 (2 HSPs)
chr8 (16-220)||(18481075-18481279)
chr8 (78-182)||(32536253-32536357)
[»] chr4 (1 HSPs)
chr4 (16-220)||(43989323-43989526)
[»] chr7 (2 HSPs)
chr7 (7-220)||(23820365-23820578)
chr7 (77-213)||(24808877-24809014)
[»] chr5 (3 HSPs)
chr5 (7-147)||(41197412-41197552)
chr5 (77-222)||(36779526-36779671)
chr5 (7-71)||(30376483-30376547)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 11351653 - 11351866
Alignment:
Q  7 agcgaaccgattggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttca 106  Q
    ||||| || |||||||||||||||| | |||||||||| ||| || ||||||||||| |||||||   |||||||||||| |||||||||||||||||||    
T  11351653 agcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctgaataatacaacctagttca 11351752  T
Q  107 ctgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11351753 ctgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtg 11351852  T
Q  207 ccgtgtgatgtcca 220  Q
    |||||||| |||||    
T  11351853 ccgtgtgaagtcca 11351866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 20639636 - 20639432
Alignment:
Q  16 attggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttcactgctatca 115  Q
    |||||||||||||||| | ||||| |||| ||| || ||||||||||| |||||||   | |||||||||| ||||||||||||||||||||| ||||||    
T  20639636 attggcttgcctcctattgaactcaacatgagagttctgaaaattacaatcgaacaactgcctacaagcctgaataatacaacctagttcactactatca 20639537  T
Q  116 cctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgat 215  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||     
T  20639536 cctaggtttgaattaaaatgttcaacaacaaacttggaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccatgtgaa 20639437  T
Q  216 gtcca 220  Q
    |||||    
T  20639436 gtcca 20639432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 6784333 - 6784120
Alignment:
Q  7 agcgaaccgattggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttca 106  Q
    ||||| || |||||||||||||||| | |||||||||| ||| || ||||||| ||| |||||||   |||||||||||| |||||||||||||||||||    
T  6784333 agcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaaataacaatcgaacaactgtctacaagcctgaataatacaacctagttca 6784234  T
Q  107 ctgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtg 206  Q
    |||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || || |||||||||||    
T  6784233 ctgctatcacctaggtttaaattaaaacgttcaacaagagacttgcaatccaaaacaaaatcaacattgtcataacgaagattagtcacccattgtagtg 6784134  T
Q  207 ccgtgtgatgtcca 220  Q
    |||||||| |||||    
T  6784133 ccgtgtgaagtcca 6784120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 21515258 - 21515101
Alignment:
Q  7 agcgaaccgattggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttca 106  Q
    ||||| || |||||||||||||||| | |||||||||| ||  || ||||||||||| |||||||   | |||||| ||| || ||||||||||||||||    
T  21515258 agcgaccccattggcttgcctcctattgaactcgacatgag--ttctgaaaattacattcgaacaactgcctacaaacctgaaaaatacaacctagttca 21515161  T
Q  107 ctgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaa 166  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21515160 ctgctatcacctaggtttgaattaaaacgttcaacaacagacttgcaatccaaaacaaaa 21515101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 32988971 - 32989141
Alignment:
Q  34 taactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaa 133  Q
    ||||||||||| ||| || ||||| ||||| |||||||   | ||||||| || ||||||||||||||||||||||||||||| || |||| ||||||||    
T  32988971 taactcgacatgagagttctgaaagttacaatcgaacaactgcctacaagtctgaataatacaacctagttcactgctatcacgtaagtttaaattaaaa 32989070  T
Q  134 tgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtag 204  Q
     ||||||||||| ||||| ||||| |||||||||| |||| |||||||||||||| | ||| |||||||||    
T  32989071 cgttcaacaacatacttggaatccgaaacaaaatccacatcgtcataatgaagattaaccacccattgtag 32989141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 29894377 - 29894590
Alignment:
Q  7 agcgaaccgattggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttca 106  Q
    ||||| || |||||||||||||||| | |||||||||| ||| || ||||||||||| |||||||   |||||||||||| |||||||||| ||||||||    
T  29894377 agcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctgaataatacaatctagttca 29894476  T
Q  107 ctgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29894477 ctgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtg 29894576  T
Q  207 ccgtgtgatgtcca 220  Q
     ||||||| |||||    
T  29894577 tcgtgtgaagtcca 29894590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 24543268 - 24543055
Alignment:
Q  7 agcgaaccgattggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttca 106  Q
    ||||| || |||||||||| ||||| | |||||||||| ||| || ||||||||||| |||||||    ||||||||||| |||||||||||||||||||    
T  24543268 agcgaccccattggcttgcatcctattgaactcgacatgagagttctgaaaattacaatcgaacaactatctacaagcctgaataatacaacctagttca 24543169  T
Q  107 ctgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543168 ctgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtg 24543069  T
Q  207 ccgtgtgatgtcca 220  Q
     ||||||| |||||    
T  24543068 tcgtgtgaagtcca 24543055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 36365086 - 36364882
Alignment:
Q  16 attggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttcactgctatca 115  Q
    |||||||||||||||| | ||||||||||  || || ||||||| ||| |||||||   | |||||||  | ||||||||||||||||||||||||||||    
T  36365086 attggcttgcctcctattgaactcgacatgggagttctgaaaatgacaatcgaacaactgcctacaagtatgaataatacaacctagttcactgctatca 36364987  T
Q  116 cctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgat 215  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||     
T  36364986 cctaggtttgaattaaaacgttcaacaacagacttggaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcatgtgaa 36364887  T
Q  216 gtcca 220  Q
    |||||    
T  36364886 gtcca 36364882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 942748 - 942535
Alignment:
Q  7 agcgaaccgattggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttca 106  Q
    ||||| || |||||||||||||||| | |||||||||||||| || ||||||||||| |||||||   | |||||||||| |||||||||||||||||||    
T  942748 agcgaccccattggcttgcctcctattgaactcgacattagagttctgaaaattacaatcgaacaactgcctacaagcctgaataatacaacctagttca 942649  T
Q  107 ctgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtg 206  Q
    || ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  942648 ctactatcacctaggtttgacttaaaatgttcaacaacagacttggaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtg 942549  T
Q  207 ccgtgtgatgtcca 220  Q
    |||||||| |||||    
T  942548 ccgtgtgaagtcca 942535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 51976815 - 51976602
Alignment:
Q  7 agcgaaccgattggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttca 106  Q
    ||||| || |||||||||||||||| | |||||| ||| ||| || ||||||||||| || ||||    ||||||||||| |||||||||||||||||||    
T  51976815 agcgaccccattggcttgcctcctattgaactcggcatgagagttctgaaaattacaatcaaacaactttctacaagcctgaataatacaacctagttca 51976716  T
Q  107 ctgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51976715 ctgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtg 51976616  T
Q  207 ccgtgtgatgtcca 220  Q
     ||||||| |||||    
T  51976615 tcgtgtgaagtcca 51976602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 36684960 - 36684747
Alignment:
Q  7 agcgaaccgattggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttca 106  Q
    ||||| || ||| |||||||||||| | |||||||||| ||| || ||||||||||| |||||||   |||||||||||| ||| |||||||||||||||    
T  36684960 agcgaccccattagcttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctgaatgatacaacctagttca 36684861  T
Q  107 ctgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtg 206  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  36684860 ctactatcacctaggtttgaattaaaatgttcaacaacaaacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagtcacccattgtagtg 36684761  T
Q  207 ccgtgtgatgtcca 220  Q
    |||||||| |||||    
T  36684760 ccgtgtgaagtcca 36684747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 8705754 - 8705561
Alignment:
Q  20 gcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttcactgctatcaccta 119  Q
    |||||||||||| | |||||||||| ||| || ||||||||||| || ||||   | |||||||||| ||||||||||||||||||||| |||||| |||    
T  8705754 gcttgcctcctattgaactcgacatgagagttctgaaaattacaatcaaacaactgcctacaagcctgaataatacaacctagttcactactatcaacta 8705655  T
Q  120 ggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtg 213  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||||    
T  8705654 ggtttgaattaaaacgttcaacaacatacttggaatccaaaacaaaatcaacatggtcatagtgaagatcagccacccattgtagcgccgtgtg 8705561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 9057641 - 9057448
Alignment:
Q  20 gcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttcactgctatcaccta 119  Q
    |||||||||||| | |||||||||| ||| || ||||||||||| || ||||   | |||||||||| ||||||||||||||||||||| |||||| |||    
T  9057641 gcttgcctcctattgaactcgacatgagagttctgaaaattacaatcaaacaactgcctacaagcctgaataatacaacctagttcactactatcaacta 9057542  T
Q  120 ggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtg 213  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||||    
T  9057541 ggtttgaattaaaacgttcaacaacatacttggaatccaaaacaaaatcaacatggtcatagtgaagatcagccacccattgtagcgccgtgtg 9057448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 4978479 - 4978668
Alignment:
Q  16 attggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttcactgctatca 115  Q
    ||||||||| ||| || | |||||||||| ||| || ||||||||| |  ||||||   | |||||||||  ||||||||||||||||| |||  |||||    
T  4978479 attggcttgtctcatattaaactcgacatgagagttctgaaaattataaccgaacaagtgcctacaagccagaataatacaacctagtttactattatca 4978578  T
Q  116 cctaggtttgaattaaaatgttc-aacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtag 204  Q
    |||||||||||||||||| |||| ||||||| | ||| ||||||||||||||| |||||||||| |||||||||||| |||| |||||||    
T  4978579 cctaggtttgaattaaaacgttcaaacaacatatttggaatccaaaacaaaattaacattgtcagaatgaagatcagacatctattgtag 4978668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 45736505 - 45736356
Alignment:
Q  23 tgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttcactgctatcacctaggt 122  Q
    ||||||||| | |||||||||| ||| || ||||||||||| |||||||   | |||||| |||||||||||||||||| ||||||||||||| |||| |    
T  45736505 tgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaattgcctacaaacctaaataatacaacctaattcactgctatcatctagat 45736406  T
Q  123 ttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaaca 172  Q
    || |||||||| ||| ||||||| ||||| ||||||||||||||||||||    
T  45736405 ttaaattaaaacgttgaacaacaaacttgaaatccaaaacaaaatcaaca 45736356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 49758974 - 49759100
Alignment:
Q  7 agcgaaccgattggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttca 106  Q
    ||||| || ||| |||||||||||| | ||| |||||| ||| || |||||||||||  | | ||   | ||||||| || |||||| ||||||||||||    
T  49758974 agcgatcccattagcttgcctcctattgaacccgacataagagttctgaaaattacaagcaagcaacagcctacaagtctgaataatgcaacctagttca 49759073  T
Q  107 ctgctatcacctaggtttgaattaaaa 133  Q
    || |||||  |||||||||||||||||    
T  49759074 ctactatcctctaggtttgaattaaaa 49759100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 18481279 - 18481075
Alignment:
Q  16 attggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttcactgctatca 115  Q
    |||| ||| ||||||| | |||||||||| ||| || ||||||||||| |||||||    ||||||||||| ||||||||||||||||||||||||||||    
T  18481279 attgacttacctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactatctacaagcctgaataatacaacctagttcactgctatca 18481180  T
Q  116 cctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||     
T  18481179 cctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcgtgtgaa 18481080  T
Q  216 gtcca 220  Q
    |||||    
T  18481079 gtcca 18481075  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 32536253 - 32536357
Alignment:
Q  78 tacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtc 177  Q
    ||||||||| |||||||||||||||||||||  ||||  |||||||||||| |||  | || |||| | ||||| |||||||| ||||||| ||||  ||    
T  32536253 tacaagcctgaataatacaacctagttcactattatcgtctaggtttgaatgaaagcgatctacaataaacttgtaatccaaagcaaaatcgacatgatc 32536352  T
Q  178 ataat 182  Q
    |||||    
T  32536353 ataat 32536357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 43989323 - 43989526
Alignment:
Q  16 attggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttcactgctatca 115  Q
    |||||||||||||||| | |||||||||| ||  || | ||||| ||| |||||||   |||| ||||||| ||||||||||||||||||||||||||||    
T  43989323 attggcttgcctcctattgaactcgacatgagcgttctaaaaat-acaatcgaacaattgtctgcaagcctgaataatacaacctagttcactgctatca 43989421  T
Q  116 cctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgat 215  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||     
T  43989422 cctaggtttgaattaaaacgttcaacaacaaacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcgtgtgaa 43989521  T
Q  216 gtcca 220  Q
    |||||    
T  43989522 gtcca 43989526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 23820578 - 23820365
Alignment:
Q  7 agcgaaccgattggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttca 106  Q
    ||||| || |||||||||||||||| | ||||||| || ||| || ||||||||||| || ||||   | |||||| ||| ||| |||||||||||||||    
T  23820578 agcgaccccattggcttgcctcctattgaactcgatatgagagttctgaaaattacaatcaaacaactgcctacaaacctgaatgatacaacctagttca 23820479  T
Q  107 ctgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtg 206  Q
    || ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||||||  |    
T  23820478 ctactatcacctaggtttgaattaaagtgtacaacaacagacttggaatccaaaacaaaattaacatggtcataatgaagatcagccacccattgtaacg 23820379  T
Q  207 ccgtgtgatgtcca 220  Q
    || ||||| |||||    
T  23820378 ccatgtgaagtcca 23820365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 24808877 - 24809014
Alignment:
Q  77 ctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgt 176  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||| |||| |||||||||||||||| ||    
T  24808877 ctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgatcaacaacagacttggaatctaaaacaaaatcaacatggt 24808976  T
Q  177 cataatgaagatcagccatccattgtag-tgccgtgtg 213  Q
    |||| |||||||  | || ||||||||| |||||||||    
T  24808977 catagtgaagatttgacacccattgtagctgccgtgtg 24809014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 41197412 - 41197552
Alignment:
Q  7 agcgaaccgattggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaacatacgtctacaagcctaaataatacaacctagttca 106  Q
    ||||| || |||||||||||||||| | |||||||||| ||| || ||||||||||| |||||||   ||||| ||||||||||||||||||||||||||    
T  41197412 agcgaccccattggcttgcctcctattgaactcgacataagagttctgaaaattacaatcgaacaactgtctataagcctaaataatacaacctagttca 41197511  T
Q  107 ctgctatcacctaggtttgaattaaaatgttcaacaacaga 147  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41197512 ctgctatcacctaggtttgaattaaaatgttcaacaacaga 41197552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 36779526 - 36779671
Alignment:
Q  77 ctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgt 176  Q
    |||||||||| ||||||||||||||||||||| || |||  |||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||| ||    
T  36779526 ctacaagccttaataatacaacctagttcactactctcaattaggtttgaattaaaacgttcaacaatagacttggaatccaaaataaaatcaacatggt 36779625  T
Q  177 cataatgaagatcagccatccattgtagtgccgtgtgatgtccatc 222  Q
     ||| ||||||||| ||||||||||||| | ||||||| |||||||    
T  36779626 tatagtgaagatcaaccatccattgtagcgtcgtgtgaagtccatc 36779671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 30376483 - 30376547
Alignment:
Q  7 agcgaaccgattggcttgcctcctaattaactcgacattagatttgtgaaaattacactcgaaca 71  Q
    ||||| || |||||||||||||||| | |||||||||| ||| || ||||||||| | |||||||    
T  30376483 agcgaccctattggcttgcctcctattgaactcgacataagagttttgaaaattataatcgaaca 30376547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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