View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_493 (Length: 230)
Name: NF11737A_low_493
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_493 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 6633780 - 6633624
Alignment:
| Q |
23 |
atatatttcccatttgagctttgttgttctcttcaacagacctaacaccaccgggtggacttattgccatttgaaatgttaatgttgctatgaatactgc |
122 |
Q |
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| T |
6633780 |
atatatttcccttttgagctttgttgttctcttcaacagacctaacaccaccgggtggacttattgccatttgaaatgttaatgttgctatgaatactgc |
6633681 |
T |
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| Q |
123 |
tactacactcatatttcctctcatctgttccaaccattcatgcttgtttttgtatga |
179 |
Q |
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| T |
6633680 |
tactacactcatatttcctctcatctgttccaaccattcatccttgtttttgtatga |
6633624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 6807795 - 6807639
Alignment:
| Q |
23 |
atatatttcccatttgagctttgttgttctcttcaacagacctaacaccaccgggtggacttattgccatttgaaatgttaatgttgctatgaatactgc |
122 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6807795 |
atatatttcctttttgagctttgttgttctcttcaacagacctaacaccaccgggtggacttattgccatttaaaatgttaatgttgctatgaatactgc |
6807696 |
T |
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| Q |
123 |
tactacactcatatttcctctcatctgttccaaccattcatgcttgtttttgtatga |
179 |
Q |
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| T |
6807695 |
tactacactcatatttcctctcatctgttccaaccattcatccttgtttttgtatga |
6807639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 6632533 - 6632417
Alignment:
| Q |
63 |
cctaacaccaccgggtggacttattgccatttgaaatgttaatgttgctatgaatactgctactacactcatatttcctctcatctgttccaaccattca |
162 |
Q |
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| T |
6632533 |
cctaacgccacccggtggatttaaacccatttgaaatgttattgttgctatgaatattgctactacactaaaattccctctcatcttttccaaccagtca |
6632434 |
T |
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| Q |
163 |
tgcttgtttttgtatga |
179 |
Q |
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| T |
6632433 |
ttcttgtttttgtatga |
6632417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 6835691 - 6835575
Alignment:
| Q |
63 |
cctaacaccaccgggtggacttattgccatttgaaatgttaatgttgctatgaatactgctactacactcatatttcctctcatctgttccaaccattca |
162 |
Q |
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|||||| |||||||||||| |||| ||||||||||| |||| |||||||||||||| |||||||| ||||||||| || ||||| || ||||||||| || |
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| T |
6835691 |
cctaacgccaccgggtggatttatagccatttgaaacgttattgttgctatgaatattgctactatactcatattccccctcatttgatccaaccatgca |
6835592 |
T |
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| Q |
163 |
tgcttgtttttgtatga |
179 |
Q |
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| |||||||| |||||| |
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| T |
6835591 |
ttcttgttttggtatga |
6835575 |
T |
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