View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_500 (Length: 230)
Name: NF11737A_low_500
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_500 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 22284534 - 22284299
Alignment:
| Q |
1 |
tgataataatttaaaaaatggaagaatttgaatgtaactgcatgtgtcggacattggacacggcttta-tctgaagtcgaagtgctaaatatctagcagt |
99 |
Q |
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| T |
22284534 |
tgataataatttgaaaaatggaaaaatttgaatgtaactgcatgtgtcggacattggacatgtctttaatctaaagcctaagtgctaaataactatcagt |
22284435 |
T |
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| Q |
100 |
tgcctagaactttgttaatatacaatgaatcataatataaagccgaaagaatatgcagcagcatccg----agaga-aaacttaaggagtacccaaagaa |
194 |
Q |
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| T |
22284434 |
tgcctagaactttgttaatatacaatgaattataatataaagccgaaagaatatgcatcagcatcagcataagagagaaacttaaggagtgccgaaagaa |
22284335 |
T |
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| Q |
195 |
gaaatgatacttaccaaccattctctgtgaccctga |
230 |
Q |
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| T |
22284334 |
gaaatgatacttaccaaccattctctatgaccctga |
22284299 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 42083149 - 42083200
Alignment:
| Q |
2 |
gataataatttaaaaaatggaagaatttgaatgtaactgcatgtgtcggaca |
53 |
Q |
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| T |
42083149 |
gataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggaca |
42083200 |
T |
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