View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_502 (Length: 230)
Name: NF11737A_low_502
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_502 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 30249158 - 30249375
Alignment:
| Q |
18 |
atcatacaacagcttgtccataaaggtcgcagca-----tccattttgcatttactgtctagtcagagctttgagaatagactaaaattggacttgccaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30249158 |
atcatacaacagcttgtccataaaggtcgcagcactgtgtccattttgcatttactgtctagtcagagctttgagaatagactaaaattggacttgccaa |
30249257 |
T |
|
| Q |
113 |
ctccactacaaacggagcaccctatgttttatattttgtattctagcactattaacggaacactttgcctttccaaaggcgataaaacatttgtattgtg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30249258 |
ctccactacaaacggagcaccctatgttttatattttgtattctagcactattaacggaacactttgcctttccaaaggcgataaaacatttgtattgtg |
30249357 |
T |
|
| Q |
213 |
gaatccaacaacagatga |
230 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
30249358 |
gaatccaacaacagatga |
30249375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 57 - 230
Target Start/End: Original strand, 4027234 - 4027410
Alignment:
| Q |
57 |
tttgcatttactgtctagtcagagctttgagaatagactaaaattggacttgccaactccactacaaacggagcaccctatgttttatattttgtattct |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||| ||||||||| | |||| |
|
|
| T |
4027234 |
tttgcatttactgtctagtcagagctttgagaatagacttaaattggacttgccaactccacttcaacaggaggaccctatcttttatattaggggttct |
4027333 |
T |
|
| Q |
157 |
agcactattaacggaacactttgcctttccaa---aggcgataaaacatttgtattgtggaatccaacaacagatga |
230 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| || || | ||| |||||||||||||||||||||||||||| |
|
|
| T |
4027334 |
agcactaataacggaaccctttgcctttccaatgcagatgacagtacacttgtattgtggaatccaacaacagatga |
4027410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 230
Target Start/End: Original strand, 34324657 - 34324834
Alignment:
| Q |
56 |
ttttgcatttactgtctagtcagagctttgagaatagactaaaattggacttgccaactccactacaaacggagcaccctatgttttatattttgtattc |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| || |||| ||||||||| | ||| |
|
|
| T |
34324657 |
ttttgcatttactgtctagtcagagctttgagaatagacttaaattggacttgccaactccacttcaacaagaggacgctatcttttatattaggggttc |
34324756 |
T |
|
| Q |
156 |
tagcactattaacggaacactttgcctttccaa---aggcgataaaacatttgtattgtggaatccaacaacagatga |
230 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||| || || | ||| |||||||||||||||||||||||||||| |
|
|
| T |
34324757 |
tagcactaataacggaaccctttgtctttccaatgcagatgacagtacacttgtattgtggaatccaacaacagatga |
34324834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 29353200 - 29353069
Alignment:
| Q |
57 |
tttgcatttactgtctagtcagagctttgagaatagactaaaattggacttgccaactccactacaaacggagcaccctatgttttatattttgtattct |
156 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||| | ||||||||| | |||| |
|
|
| T |
29353200 |
tttgcacttactgtctagtcggagctttgagaatagactcaaattggacttgccaactccacttcaacaggaggaccctgtcctttatatttggggttct |
29353101 |
T |
|
| Q |
157 |
agcactattaacggaacactttgcctttccaa |
188 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |
|
|
| T |
29353100 |
agcactaataacggaaccctttgcctttccaa |
29353069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University