View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_51 (Length: 429)
Name: NF11737A_low_51
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 14 - 407
Target Start/End: Original strand, 12007000 - 12007393
Alignment:
| Q |
14 |
atggacatcaatgatgtaataagagatgaagatctcatggcacacaaatcagattcatatctcaatggcatagatcataaagtttttacatcttgttctg |
113 |
Q |
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| T |
12007000 |
atggatatcaatgatgtaataagagatgaagatctcatggcatacaaatcagattcatatctcaatggcatagatcataaagtttttacatcttgttctg |
12007099 |
T |
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| Q |
114 |
tacataacatccagaaaatggttgcaaatatggttcctagtgtcaaatcaaagtggccgagtgctagagaacggaatcttttaaaacgcaaagcaaaaat |
213 |
Q |
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| T |
12007100 |
tacataacatccagaaaatggttgcaaatatggttcctagtgtcaaatcaaagtggccgagtgctagagaacggaatcttttaaaacgcaaagcaaaaat |
12007199 |
T |
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| Q |
214 |
taactctaaagaccaaacaaagagctggtgcgaggatggaacagagccttcaggtactcaaaatttgacctcaaaaggcacatgtcctgattcaggaaat |
313 |
Q |
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| T |
12007200 |
taactctaaagaccaaacaaagagctggtgcgaggatggaacagagccttcaggtactcaaaatttgacctcaaaaggcacatgtcctgattcaggaaat |
12007299 |
T |
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| Q |
314 |
tatagtaaggtattgttctattttacttgctaattttatggtaatttttggccctctctggccatgtctttacatgtttggttgcactcctatg |
407 |
Q |
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| T |
12007300 |
tatagtaaggtattgttctattttacttgctaattttatggtaatttttggccctctctggccatgtctttacatgtttggttgcactcctatg |
12007393 |
T |
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