View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_513 (Length: 229)
Name: NF11737A_low_513
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_513 |
 | |
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| [»] chr2 (8 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (6 HSPs) |
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| [»] chr8 (5 HSPs) |
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| [»] chr7 (5 HSPs) |
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| [»] scaffold0913 (2 HSPs) |
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| [»] scaffold0898 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 5848771 - 5848999
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5848771 |
ttatgcttcatgattggcaagatgcacataggatttgtaatacatcttgtgcacatttgcgacaagaaggaaatgtgaaatggatcaaactagctgaagg |
5848870 |
T |
|
| Q |
101 |
aagatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgaca |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5848871 |
aagatttaagtgcaatattgatgcttctttctcccagctttctaatagagtgggaataggagtttgtataagagatgatacatgcacttttgttttgaca |
5848970 |
T |
|
| Q |
201 |
aaagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
|||||| |||||||||||| ||||||||| |
|
|
| T |
5848971 |
aaagcataatggtttactccagtctgtga |
5848999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 18579999 - 18579770
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgta-atacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaag |
99 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| || ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| ||| |
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|
| T |
18579999 |
ttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatcttgttcacagtcgcgacaagaaggaaatgtgaaatggatcaaaccagcgaaag |
18579900 |
T |
|
| Q |
100 |
gaagatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgac |
199 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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|
| T |
18579899 |
gaagatttaaatgcaatattgatgcttctttctcccagctttctaatagagtgggaataggagtttgtataagggatgatacaggcacttttgttttggc |
18579800 |
T |
|
| Q |
200 |
aaaagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
|||| | ||||||||||||| ||||||||| |
|
|
| T |
18579799 |
aaaaactgaatggtttactccagtctgtga |
18579770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 15746036 - 15745813
Alignment:
| Q |
2 |
tatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagga |
101 |
Q |
| |
|
|||| |||||| || ||||||||||| |||| || ||||||| ||||||||||| | |||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
15746036 |
tatgtttcatgcttggcaagatgcacgtaggtttcgtaatacttcttgtgcacagttgcgacaagaaggaaatgtgaaatggatcaaaccagttgaaggg |
15745937 |
T |
|
| Q |
102 |
agatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgacaa |
201 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||| |||||||| ||||||||| | |||||||||||| || |
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|
| T |
15745936 |
agatttaagtgcaatattgatgcttttttctctatgctttctaatagagtgggaataggagtctgtataagagatgatacaggtacttttgttttggtaa |
15745837 |
T |
|
| Q |
202 |
aagcagaatggtttactctagtct |
225 |
Q |
| |
|
|| | |||||| |||||| ||||| |
|
|
| T |
15745836 |
aaactgaatggcttactccagtct |
15745813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 33171358 - 33171157
Alignment:
| Q |
18 |
caagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaaggaagatttaagtgcaata |
117 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||| | |||||||||| | | || ||||| | ||||||| | || ||| || |||||||| ||||| |
|
|
| T |
33171358 |
caagatgctcataggatttataatacaacttgtgcataaccgcgacaagacgaatatttgaaacgaatcaaaccaactaaagaaatatttaagtacaata |
33171259 |
T |
|
| Q |
118 |
ttgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgacaaaagcagaatggtttac |
217 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| | ||| | ||||||||||| |
|
|
| T |
33171258 |
ttgatgtttctttctcccatctttctaatagagtggtaataggagtttgtataagggatg--acatacacttttgttttggctaaaactgaatggtttac |
33171161 |
T |
|
| Q |
218 |
tcta |
221 |
Q |
| |
|
|||| |
|
|
| T |
33171160 |
tcta |
33171157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 40492613 - 40492515
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaag |
99 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40492613 |
ttatgcttaatgattggcaagatgcacgtaggatttgtaatacaccttgtgcacatccgtgacaagaaggaaatgtgaaatggatcaaaccagctgaag |
40492515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 19051269 - 19051366
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaa |
98 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||||||||||||||||| | || ||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19051269 |
ttatgcttcatgattgacaagatgctcgtaggatttgtaatacatcttgttcgcagtcgtgacaagaaggaaatgtgaaatggatcaaaccagctgaa |
19051366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 36098451 - 36098637
Alignment:
| Q |
10 |
atgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaaggaagatttaa |
109 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| | ||||| || ||||||||| || | |||||||||||| |||| | ||||||| ||||||| |
|
|
| T |
36098451 |
atgattggcaagatgcacgtaggatttgtaatatactttgtgtgcagtcgcgacaaacagtag-tgtgaaatggattaaaccaagtgaaggatgatttaa |
36098549 |
T |
|
| Q |
110 |
gtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttg |
197 |
Q |
| |
|
|||||||||| || || ||||||| | | | |||||||||| |||||||||||||| ||||| ||||||||| || |||||||||| |
|
|
| T |
36098550 |
gtgcaatattaatgtttttttctcctaatatactaatagagttggaataggagtttgcataagagatgatacacacatttttgttttg |
36098637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 5509814 - 5509872
Alignment:
| Q |
61 |
gacaagaaggaaatgtgaaatggatcaaactagctgaaggaagatttaagtgcaatatt |
119 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
5509814 |
gacaagaagaaaatgtgaaatggataaaactagctgaaagaagatttaaatgcaatatt |
5509872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 48026572 - 48026352
Alignment:
| Q |
9 |
catgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaaggaagattta |
108 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48026572 |
catgattgacaagatgcacgtaggatttgtaatacatcttgtggacatcggcgacaagaaggaaatgtgaaatggatcaaaccagctgaaggaagattta |
48026473 |
T |
|
| Q |
109 |
agtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgacaaaagcaga |
208 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | || |
|
|
| T |
48026472 |
agtgcaatattgatgcttctttctcccagctttctaatagagtgagaataggagtttgtataagggatgatacatgcacttttgttttggcaaaaactga |
48026373 |
T |
|
| Q |
209 |
atggtttactctagtctgtga |
229 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
48026372 |
atggtttacttcagtctgtga |
48026352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 52586106 - 52585878
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagg |
100 |
Q |
| |
|
||||| || |||||| | ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52586106 |
ttatgattgatgattggtaagatgcacgtaggatttgtaatacatcttgtgcacatccgcgacaagaaggaaatgtgaaatggatcaaaccagctgaagg |
52586007 |
T |
|
| Q |
101 |
aagatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgaca |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| || |
|
|
| T |
52586006 |
aagatttaagtgcaatattgatgcttctttctcccagctttctaatagagtgggaataagagtttgtataagagatgatacagacacttttgttttggca |
52585907 |
T |
|
| Q |
201 |
aaagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
||| | ||||||||||||| ||| ||||| |
|
|
| T |
52585906 |
aaaactgaatggtttactccagtatgtga |
52585878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 20685044 - 20685271
Alignment:
| Q |
2 |
tatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagga |
101 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| || ||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20685044 |
tatgcttcatgattggcaagatgcacgtaggtttcgtaatacattttgtgcacagtcgcaacaagaaggaaatgtgaaatggatcaaaccagctgaagga |
20685143 |
T |
|
| Q |
102 |
agatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgacaa |
201 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| | ||| |
|
|
| T |
20685144 |
agatttaagtgcaatattgatgtttctttcttacaactttctaatagagtgggaatagcagtttgtataagggatgttacattcacttttgtttcggcaa |
20685243 |
T |
|
| Q |
202 |
aagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
|| | |||| |||||||| ||| ||||| |
|
|
| T |
20685244 |
aaactgaatcgtttactccagtatgtga |
20685271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 53580928 - 53581152
Alignment:
| Q |
2 |
tatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagga |
101 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| || | | ||||||||||| ||| |||||||||||||||||||||||||| |||||| |||| ||||| |
|
|
| T |
53580928 |
tatgcttcatgattggcaagatgcacgtaggtttcgcattacatcttgtgtacagccgcgacaagaaggaaatgtgaaatgggtcaaaccagctcaagga |
53581027 |
T |
|
| Q |
102 |
agatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtata-agggatgatacatgcacttttgttttgaca |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |
|
|
| T |
53581028 |
agatttaagtgcaatattgatgcttctttctcaca----cctaatagagtgggaataggagtttgtatataaggatgatacatgcacttttgttttggca |
53581123 |
T |
|
| Q |
201 |
aaagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
||| | ||||||||||||||||||||||| |
|
|
| T |
53581124 |
aaaactgaatggtttactctagtctgtga |
53581152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 4136022 - 4136212
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagg |
100 |
Q |
| |
|
||||| ||||||||| ||||||||| | || ||||||||||| ||||||| |||| || |||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
4136022 |
ttatgtttcatgattggcaagatgctcgtaagatttgtaatatatcttgtccacagccgtgacaagaaggaaatgtgaaatggaccaaacaagctgaagg |
4136121 |
T |
|
| Q |
101 |
aagatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcactttt |
191 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
4136122 |
aagatttaagtgtaatattgatatttctttctcctagctttctaatagagtgggtataagagtttgtataagggatgatacatgcaatttt |
4136212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 8726528 - 8726743
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagg |
100 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||| | || ||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
8726528 |
ttatgcttcatgactggcaagatgcacgtaggatttgtaatacatctcgtgcacaaccatgataag---gaaatgtgaaatagatcaaaccagctgaagg |
8726624 |
T |
|
| Q |
101 |
aagatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgaca |
200 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| || ||| ||||| | |||||||| ||||||||||||||||||||| ||||||||| |||||| || |
|
|
| T |
8726625 |
aagatttaagtgcaaaattgatacttatttctttcaactttttaataaaatgggaatatgagtttgtataagggatgatatatgcactttcgttttggca |
8726724 |
T |
|
| Q |
201 |
aaagcagaatggtttactc |
219 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
8726725 |
aaaaatgaatggtttactc |
8726743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 9078415 - 9078630
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagg |
100 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||| | || ||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
9078415 |
ttatgcttcatgactggcaagatgcacgtaggatttgtaatacatctcgtgcacaaccatgataag---gaaatgtgaaatagatcaaaccagctgaagg |
9078511 |
T |
|
| Q |
101 |
aagatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgaca |
200 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| || ||| ||||| | |||||||| ||||||||||||||||||||| ||||||||| |||||| || |
|
|
| T |
9078512 |
aagatttaagtgcaaaattgatacttatttctttcaactttttaataaaatgggaatatgagtttgtataagggatgatatatgcactttcgttttggca |
9078611 |
T |
|
| Q |
201 |
aaagcagaatggtttactc |
219 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
9078612 |
aaaaatgaatggtttactc |
9078630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10260067 - 10260295
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagg |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
10260067 |
ttatgctttatgattggcaagatgcacgtaggatttgtaatacatcttgtgcacaaccgcgacaagaaggaaatgtgaaattgatcaaaccagctgaagg |
10260166 |
T |
|
| Q |
101 |
aagatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgaca |
200 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10260167 |
aagatttaagtccaatattgatgcttctttctcctaactttctactagagtgggaataggagtttgtataagggatgatacatgcacttttgttttggta |
10260266 |
T |
|
| Q |
201 |
aaagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
||| | ||||||||||||| ||| ||||| |
|
|
| T |
10260267 |
aaaactgaatggtttactccagtttgtga |
10260295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 9605386 - 9605191
Alignment:
| Q |
2 |
tatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagga |
101 |
Q |
| |
|
|||| ||||||||| |||||||| | |||||||| |||||||||||||||||| || ||||||||| ||||||||||| |||||||| ||||||| || |
|
|
| T |
9605386 |
tatgattcatgattggcaagatgttcgtaggatttataatacatcttgtgcacaaccgggacaagaagaaaatgtgaaattgatcaaaccagctgaaaga |
9605287 |
T |
|
| Q |
102 |
agatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttg |
197 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9605286 |
atatttaagtgcaatattgatgactctttctcccaactttttattagagtgggaataagagtttgtataagggatgatacaaacacttttgttttg |
9605191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 17834642 - 17834555
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaa |
88 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
17834642 |
ttatgcttcatgattggcaagatgcacataggatttgtaatacatcttgtgcacatccgcgacaagaaggaaatgtgaaattgatcaa |
17834555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 8783172 - 8783409
Alignment:
| Q |
2 |
tatgcttcatgattagcaagatgcacataggatttgtaataca--tcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaag |
99 |
Q |
| |
|
|||||||||||| | |||||||||| || ||||||||||||| |||||| |||| | || | ||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
8783172 |
tatgcttcatgaatggcaagatgcatgtacgatttgtaatacacatcttgtacacaattgcaagaagaaggaattgtgaaatggatcaaaccagttgaag |
8783271 |
T |
|
| Q |
100 |
gaagatttaagtgcaatattgatacttctttctcccagt--------------tttctaatagagtgggaataggagtttgtataagggatgatacatgc |
185 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| | |||||||||||||||||||| ||||||||| |||||| |||||| || |
|
|
| T |
8783272 |
agagatttaagtgcaatattgatgtttctttatcccaattttttaatcccaactttctaatagagtgggaatatgagtttgtagaagggacgatacaagc |
8783371 |
T |
|
| Q |
186 |
acttttgttttgacaaaagcagaatggtttactctagt |
223 |
Q |
| |
|
|||||| ||||||||||| | ||| ||||||||||||| |
|
|
| T |
8783372 |
acttttattttgacaaaaactgaacggtttactctagt |
8783409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 16912718 - 16912601
Alignment:
| Q |
2 |
tatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagga |
101 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||||||||||| | |||||||||| ||| |||||||||||||||||||||||||||| |||| ||| | |
|
|
| T |
16912718 |
tatgcttcatgattgacaaaatgcatgtaggatttgtaatacgttttgtgcacatccgcaacaagaaggaaatgtgaaatggatcaaatcagcttaagaa |
16912619 |
T |
|
| Q |
102 |
agatttaagtgcaatatt |
119 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
16912618 |
agatttaagtgcaatatt |
16912601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 17237922 - 17237706
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagg |
100 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17237922 |
ttatgcttcatgattgacaagatgcacgtaggatttgtaatacatcttgtgcacatccacgacaagaaggaaatgtgaaatggatcaaaccagctgaagg |
17237823 |
T |
|
| Q |
101 |
aagatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgaca |
200 |
Q |
| |
|
||||||||| |||||||||| | ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
17237822 |
aagatttaaatgcaatattgttgcttctttctcctagctttctaatagagtgggaatatgagtttgtataagggatgatacagacacttttgttttggca |
17237723 |
T |
|
| Q |
201 |
aaagcagaatggtttac |
217 |
Q |
| |
|
||| | ||||||||||| |
|
|
| T |
17237722 |
aaaactgaatggtttac |
17237706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 32296333 - 32296110
Alignment:
| Q |
2 |
tatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagga |
101 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || ||||||||||||||||| | |||||||||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
32296333 |
tatgcttcatgattggcaagatgcacataggtttcgtaatacatcttgtgcatagccgcgacaagatgaaaatgtgaaatggatcaaaccagctgaagga |
32296234 |
T |
|
| Q |
102 |
agatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgacaa |
201 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||| |||||| |||||||| ||||| ||| |
|
|
| T |
32296233 |
agatttaagtgcaatattgatgcttctttctaacaattttctaatagagggggaataggagtttgtataatggatgag----gcacttttattttggcaa |
32296138 |
T |
|
| Q |
202 |
aagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
|| | ||||||||||||| |||| |||| |
|
|
| T |
32296137 |
aaactgaatggtttactccagtccgtga |
32296110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 20174318 - 20174421
Alignment:
| Q |
97 |
aaggaagatttaagtgcaatattgatacttctttctcccagt---tttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgt |
193 |
Q |
| |
|
|||||| |||||||||||||||| || |||||||| | ||| ||||||||| || ||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
20174318 |
aaggaaaatttaagtgcaatattaatgtttctttcttctagtaactttctaataaagcgggaataagagtttgtataagggatgatacatacacttttgt |
20174417 |
T |
|
| Q |
194 |
tttg |
197 |
Q |
| |
|
|||| |
|
|
| T |
20174418 |
tttg |
20174421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 23040536 - 23040308
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagg |
100 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||| || |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
23040536 |
ttatccttcatgattggcaagatgcacgtaggtttcgtaatacatcttgtgcacatccgcgacaagaaggaaatgtgaaatgaatcaaaccagctcaagg |
23040437 |
T |
|
| Q |
101 |
aagatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgaca |
200 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| || ||||||||||||||||||||||||| ||||||| |||||||||| |||||||| ||||| || |
|
|
| T |
23040436 |
aagattttagtgcaatattgatgcttctttctcatagctttctaatagagtgggaataggagtctgtataaaggatgatacaggcacttttattttggca |
23040337 |
T |
|
| Q |
201 |
aaagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
||| | ||||||||||||| ||||||||| |
|
|
| T |
23040336 |
aaaactgaatggtttactccagtctgtga |
23040308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 48859081 - 48859309
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagg |
100 |
Q |
| |
|
||||||||||||||| ||| |||||| ||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
48859081 |
ttatgcttcatgattggcatgatgcaagtaggatttgtaatacatcttgtgcataaccacgacaagaaggaaatgtgaaatggatcaaaccaactgaagg |
48859180 |
T |
|
| Q |
101 |
aagatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgaca |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
48859181 |
aagatttaagtgcaatattgatgcttctttctcccaactttctaatagagtgagaataagagtttgtataagggatgatacatgcatttttgttttggca |
48859280 |
T |
|
| Q |
201 |
aaagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
||| | ||||| ||||||| |||||||| |
|
|
| T |
48859281 |
aaaactgaatgatttactccggtctgtga |
48859309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 13596559 - 13596780
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagg |
100 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | || | |||| |
|
|
| T |
13596559 |
ttatgcttcatgattggcaagatgcatgtaggatttgtaatacatcttgtgcacagttgcgacaagaaggaaatgtgaaatggatcaagccagttaaagg |
13596658 |
T |
|
| Q |
101 |
aagatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgaca |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||| |||||||||| || |
|
|
| T |
13596659 |
aagatttaagtgcaatattgatgcttctttctcccagctttctaatagagtgggaatagaagtttgtataagagatgag----gcaattttgttttggca |
13596754 |
T |
|
| Q |
201 |
aaagcagaatggtttactctagtctg |
226 |
Q |
| |
|
||| | ||||||||||||| |||||| |
|
|
| T |
13596755 |
aaaactgaatggtttactcgagtctg |
13596780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 22910813 - 22911039
Alignment:
| Q |
2 |
tatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagga |
101 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| || ||||||| |||||||||||| || |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22910813 |
tatgcttcatgattggcaagatgcacgtaggtttcgtaatacttcttgtgcacatccg-gacaagaaggaaatgtgaaatggatcaaaccagctgaagga |
22910911 |
T |
|
| Q |
102 |
agatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgacaa |
201 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
22910912 |
agatttaagtgcaatattgatgcttcattctcacaactttctaatatagtgggaataggagtctgtataagggatgatacatgtacttttgttttggcaa |
22911011 |
T |
|
| Q |
202 |
aagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
|| | ||||| |||||| ||| ||||| |
|
|
| T |
22911012 |
aaactaaatggcttactccagtatgtga |
22911039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 26754526 - 26754734
Alignment:
| Q |
5 |
gcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaaggaaga |
104 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| || ||| ||||||| |||||||||||| |||| |||||||| ||||||| | |||||||||| |
|
|
| T |
26754526 |
gcttcatgattgacaagatgcacgtaggatttgtaacacgtctcgtgcacaatcgcgacaagaaagaaacgtgaaatgaatcaaaccatgtgaaggaaga |
26754625 |
T |
|
| Q |
105 |
tttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgacaaaag |
204 |
Q |
| |
|
||||||| |||||||||| |||||||||| | ||| |||||||||| |||||||||||| ||||||||||||| |||||| |||||||||||| |
|
|
| T |
26754626 |
tttaagtacaatattgatgcttctttctcataactttataatagagtgagaataggagttt------gggatgatacatgaacttttattttgacaaaag |
26754719 |
T |
|
| Q |
205 |
cagaatggtttactc |
219 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
26754720 |
ctgagtggtttactc |
26754734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 44021851 - 44022045
Alignment:
| Q |
20 |
agatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaaggaagatttaagtgcaatatt |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44021851 |
agatgcacgtaggatttgtaatacatcttgtgcacaaccgctgcaagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatatt |
44021950 |
T |
|
| Q |
120 |
gatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgacaaaagcagaatggtt |
214 |
Q |
| |
|
||| ||||||||| |||| ||||||||| ||||||||||||||||||||||| |||||||||| || |||||||||| ||||| | |||||||| |
|
|
| T |
44021951 |
gatgcttctttcttccagctttctaataaagtgggaataggagtttgtataatggatgatacagacatttttgttttggcaaaaactgaatggtt |
44022045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 32922713 - 32922940
Alignment:
| Q |
2 |
tatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagga |
101 |
Q |
| |
|
|||| ||||||||| | |||||||| || ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| | |||||||| |
|
|
| T |
32922713 |
tatgtttcatgattggtaagatgcatgtaagatttgtaatacatcatgtgcacaaccgcgacaagtaggaaatgtgaaatggatcaaaccaactgaagga |
32922812 |
T |
|
| Q |
102 |
agatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgacaa |
201 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||| |||||||||||||||||||| | |||||||||||||| ||| |
|
|
| T |
32922813 |
atatttaagtgcaatattgatgcttctttctcccatctttataatagactgggaataagagtttgtataagggatgatgtaggcacttttgttttggcaa |
32922912 |
T |
|
| Q |
202 |
aagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
|| | ||||||||||||| ||| ||||| |
|
|
| T |
32922913 |
aaactgaatggtttactccagtttgtga |
32922940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 61 - 229
Target Start/End: Complemental strand, 30940023 - 30939855
Alignment:
| Q |
61 |
gacaagaaggaaatgtgaaatggatcaaactagctgaaggaagatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaatagg |
160 |
Q |
| |
|
|||| |||||||||||||||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| | |
|
|
| T |
30940023 |
gacacgaaggaaatgtgaaataaattaaatcagctgaaagaagatttaagtgcaatattgatacttctttctcccagctttcaaataaagtgggaataag |
30939924 |
T |
|
| Q |
161 |
agtttgtataagggatgatacatgcacttttgttttgacaaaagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||| | ||||| ||||||| ||||||||| |
|
|
| T |
30939923 |
agtttgtataagggatgatacatgcactttcgttttggcaaaaactgaatgatttactcaagtctgtga |
30939855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 43896079 - 43896275
Alignment:
| Q |
6 |
cttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaaggaagat |
105 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||||||||||| ||||| | ||||||||||| ||||||| |||||||||||| |||||| || |||| |
|
|
| T |
43896079 |
cttcatgattgacaagatgcatgtaggatatgtaatacatctcgtgcatagccgcgacaagaaagaaatgttaaatggatcaaagcagctgaggggagat |
43896178 |
T |
|
| Q |
106 |
ttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgacaaaa |
203 |
Q |
| |
|
|||||||| |||||||| || |||||||||| |||||||||| |||| |||| ||| ||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
43896179 |
ttaagtgctatattgat-gttttttctcccagctttctaatagggtggaaatatgaggttgtataagggattatacataaacttttgttttgacaaaa |
43896275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 42131726 - 42131901
Alignment:
| Q |
2 |
tatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaagga |
101 |
Q |
| |
|
|||||||||||||| ||| ||||| |||| |||| ||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| || || |
|
|
| T |
42131726 |
tatgcttcatgattggca---tgcacgtaggttttgcaatacatcttgtgcacaaccgcgacaagaaggaaatgtgaaatagatcaaaccagctaaaaga |
42131822 |
T |
|
| Q |
102 |
agatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgt |
193 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||| | |||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
42131823 |
ggatttaagtgcaatattga-------------cagctttctaatagagtgggaacatgagtttgtataagggatgatccatacacatttgt |
42131901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 39220664 - 39220762
Alignment:
| Q |
98 |
aggaagatttaagtgcaatattgatacttctttctcccagttttctaatagagtgggaataggagtttgtataagggatgatacatgcacttttgtttt |
196 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| ||| | | |||||||| ||||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
39220664 |
aggaggatttaagtgcaatattgatgcttctttttccaaacaaaccaatagagttggaataggagtatgcataatggatgatacatgcacttttgtttt |
39220762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 15609794 - 15609890
Alignment:
| Q |
1 |
ttatgcttcatgattagcaagatgcacataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctga |
97 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15609794 |
ttatgcttcatgattggcaagatgcacgttggatttttaatacatcttgtgcacaaccgcgacaagaaggaaatgtgaaatggatcaaaccagctga |
15609890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 15609892 - 15609975
Alignment:
| Q |
146 |
tagagtgggaataggagtttgtataagggatgatacatgcacttttgttttgacaaaagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||| ||| ||||| |
|
|
| T |
15609892 |
tagagtgggaatatgagtttgtataagggatgatacatgcacttttgttttggcaaaaactgaatgatttactccagtttgtga |
15609975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 5827361 - 5827433
Alignment:
| Q |
155 |
aataggagtttgtataagggatgatacatgcacttttgttttgacaaaagcagaatggtttactctagtctgt |
227 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||| ||||| | ||||||||||||| ||||||| |
|
|
| T |
5827361 |
aataggagtctgtataagggatgatacagacacttttgttttggcaaaaactgaatggtttactccagtctgt |
5827433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0913 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0913
Description:
Target: scaffold0913; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 3237 - 3329
Alignment:
| Q |
28 |
ataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaaggaagatttaagtgcaatattg |
120 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| | || || ||||||||| |||||| |||| |
|
|
| T |
3237 |
ataggatttgtaatacatcttgtacgcagccgcgacaagaaggaaatgtgaaatggatcaaaccaactaaacgaagatttatgtgcaagattg |
3329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0913; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 3329 - 3408
Alignment:
| Q |
150 |
gtgggaataggagtttgtataagggatgatacatgcacttttgttttgacaaaagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||| ||||||||| |
|
|
| T |
3329 |
gtggaaataagagtttgtataagggatgatacatacacttttgttttggcaaaaactaaatggtttactccagtctgtga |
3408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0898 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0898
Description:
Target: scaffold0898; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 2364 - 2272
Alignment:
| Q |
28 |
ataggatttgtaatacatcttgtgcacattcgcgacaagaaggaaatgtgaaatggatcaaactagctgaaggaagatttaagtgcaatattg |
120 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| | || || ||||||||| |||||| |||| |
|
|
| T |
2364 |
ataggatttgtaatacatcttgtacgcagccgcgacaagaaggaaatgtgaaatggatcaaaccaactaaacgaagatttatgtgcaagattg |
2272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0898; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 2272 - 2193
Alignment:
| Q |
150 |
gtgggaataggagtttgtataagggatgatacatgcacttttgttttgacaaaagcagaatggtttactctagtctgtga |
229 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||| ||||||||| |
|
|
| T |
2272 |
gtggaaataagagtttgtataagggatgatacatacacttttgttttggcaaaaactaaatggtttactccagtctgtga |
2193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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