View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_515 (Length: 228)
Name: NF11737A_low_515
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_515 |
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| [»] scaffold0015 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 178489 - 178267
Alignment:
| Q |
6 |
tgcaatgagatggacatctccctttcaaatcggataatttccaccctatcgcttctttgttgaacttgaggatttccaccaactttgcttcttcagtgac |
105 |
Q |
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| T |
178489 |
tgcaataagatggacatatccctttcaaatcggataatttccaccctatcgcttctttgttgaacttgaggatttccaccaactttgcttcttcagtgac |
178390 |
T |
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| Q |
106 |
ggacaaggagctactaatgatcaccggtttggtaccaccgtcttcaaggaacacatatttcaaatgtgatggtaaaactttcaattcaaccttggtgtca |
205 |
Q |
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| T |
178389 |
ggacaaggagctactaatgatcaccggtttggtaccaccatcttcaaggaacacatatttcacatgtgatggtaaaactttcaattcaaccttggtgtca |
178290 |
T |
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| Q |
206 |
tcaactttggcttcttccttgga |
228 |
Q |
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| T |
178289 |
tcaactttggcttcttccttgga |
178267 |
T |
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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 20172083 - 20171889
Alignment:
| Q |
34 |
atcggataatttccaccctatcgcttctttgttgaacttgaggatttccaccaactttgcttcttcagtgacggacaaggagctactaatgatcaccggt |
133 |
Q |
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| T |
20172083 |
atcggacaacttccaacctattgcttctttattactcttgaggacttcgaccaattttttttcctctttgacggacaaggagctactaatgttaaccggt |
20171984 |
T |
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| Q |
134 |
ttggtaccaccgtcttcaaggaacacatatttcaaatgtgatggtaaaactttcaattcaaccttggtgtcatcaactttggcttcttccttgga |
228 |
Q |
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| T |
20171983 |
ttggtaccatcattttcaaaaaaaacgtacttcaagtgtgatggtaagacttttagttcaaccttggcatcaccaactttggattcttccttgga |
20171889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 17787590 - 17787509
Alignment:
| Q |
117 |
tactaatgatcaccggtttggtaccaccgtcttcaaggaacacatatttcaaatgtgatggtaaaactttcaattcaacctt |
198 |
Q |
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| T |
17787590 |
tactaatgatcaccggttttgtgccatcctcttcaaggcatacatattttagatgtgacgacaaaaccttcatttcaacctt |
17787509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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