View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_519 (Length: 228)
Name: NF11737A_low_519
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_519 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 13219553 - 13219764
Alignment:
| Q |
1 |
atactcatcttcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgagga |
100 |
Q |
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| T |
13219553 |
atactcatcatcaatacattgcaggatttattatgacaggggcttttgctcatggagcgatattttttattcgggattacaatcccgaacagaatgagga |
13219652 |
T |
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| Q |
101 |
taatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtc |
200 |
Q |
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| T |
13219653 |
taatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtc |
13219752 |
T |
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| Q |
201 |
cataatgatgtc |
212 |
Q |
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|||||||||||| |
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| T |
13219753 |
cataatgatgtc |
13219764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 47842228 - 47842288
Alignment:
| Q |
41 |
ggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggat |
101 |
Q |
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| T |
47842228 |
ggcttttgcttatggagcgatattctttattcgagattgcaatcccgaatagaatgaggat |
47842288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 10996466 - 10996673
Alignment:
| Q |
1 |
atactcatcttcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgagga |
100 |
Q |
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| T |
10996466 |
atactcatcatcaattcattgcaggatttattatgacatgagcttttgctcatggaacgatattttt-atttgagattacaatcccgaacataatgagaa |
10996564 |
T |
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| Q |
101 |
taatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtc |
200 |
Q |
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| T |
10996565 |
taatgtattggcag--atgttagagcacaaagaagctatcatatcccatttaagttgagccatcctatttctagggttccatactttgggactttatgtc |
10996662 |
T |
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| Q |
201 |
cataatgatgt |
211 |
Q |
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| T |
10996663 |
cataatgatgt |
10996673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 238156 - 237952
Alignment:
| Q |
1 |
atactcatcttcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgagga |
100 |
Q |
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||||||||| ||||| ||||| || || || |||||||||||||||||||||||||| || ||||| ||| | ||||| ||||| |||||||||||||| |
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| T |
238156 |
atactcatcaccaatatattgcggggttcatcatgacaggggcttttgctcatggagctatttttttcattagggattacaatccggaacagaatgagga |
238057 |
T |
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| Q |
101 |
taatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtc |
200 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||| ||||| |||||||| |
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| T |
238056 |
taatgtattggcaagaatgttagaccataaagaagctatcatatctcatttaagttgggctagcctctttctaggattccataccttgggcctttatgtt |
237957 |
T |
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| Q |
201 |
cataa |
205 |
Q |
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||||| |
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| T |
237956 |
cataa |
237952 |
T |
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