View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_523 (Length: 227)
Name: NF11737A_low_523
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_523 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38936156 - 38936377
Alignment:
| Q |
1 |
gacgaaggaggggaggtcggagatatgtgaagcgccgtcgtgtgtggcggcgatagtgaacaaagtattgaaagtatccaccggagcgacggagcacgcg |
100 |
Q |
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| T |
38936156 |
gacgaaggaggggaggtcggagatatgtgaagcgccgtcgtgtgtggtggcgatagtgaacaaagtattgaaagtatccaccgtagcgacggagcacgcg |
38936255 |
T |
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| Q |
101 |
gttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaagattttgcttctgatgc |
200 |
Q |
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| T |
38936256 |
gttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaagattttgcttctgatgc |
38936355 |
T |
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| Q |
201 |
aaagtaattgttcgccacaagt |
222 |
Q |
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| T |
38936356 |
aaagtaattgttcgccacaagt |
38936377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 43741730 - 43741866
Alignment:
| Q |
86 |
gcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaaga |
185 |
Q |
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| T |
43741730 |
gcgacggagcacgcagtaacgacgctgtggagtgtttgttatctgtttcgcgatcaaaaagcacaagaagcggttacgatggcaaatggattaacgaaga |
43741829 |
T |
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| Q |
186 |
ttttgcttctgatgcaaagtaattgttcgccacaagt |
222 |
Q |
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| T |
43741830 |
tattgttgctaatacagagtaattgttctccacaagt |
43741866 |
T |
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