View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_525 (Length: 227)
Name: NF11737A_low_525
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_525 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 41914904 - 41914708
Alignment:
| Q |
30 |
ggtgttgcttttatttggggagctttcgggtctcacaatgaattttcacaaaattatgctgattggtgcaaacatccctgcttcctggttgtcagaggct |
129 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||| ||| ||||||||||||||||||||||| |
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| T |
41914904 |
ggtgttgcttttatttggggagctttcgggtctcacagtgaattttcacaaaagtatgctgactggtgtaaatatctctgcttcctggttgtcagaggct |
41914805 |
T |
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| Q |
130 |
gctatgatgatgagttgtcgcagaggtaccattccttttgtatatttggagctgcctatcggaggtgattctagaaaaatctctttttggaaacctg |
226 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41914804 |
gctatgatgatgagttgtcgtcgaggtaccattccttttgtatatttggggctgcctatcggaggtgattctagaaaaatctctttttggaaacctg |
41914708 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 6023993 - 6023800
Alignment:
| Q |
30 |
ggtgttgcttttatttggggagctttcgggtctcacaatgaattttcacaaaattatgctgattggtgcaaacatccctgcttcctggttgtcagaggct |
129 |
Q |
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| T |
6023993 |
ggtgttgcttttatttgaggagatgtcaggtctaaaagtaaattttcacaagagtatgttgactggtgtgaatatccatgtttcttggttgtcagaggcg |
6023894 |
T |
|
| Q |
130 |
gctatgatgatgagttgtcgcagaggtaccattccttttgtatatttggagctgcctatcggaggtgattctagaaaaatctctttttggaaac |
223 |
Q |
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||||||||||| | |||||| ||||||||||| |||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
6023893 |
gctatgatgattaattgtcgaagaggtaccatcccttttgtctatttggggctgcctatcggaggtgattctaagaaactctctttttggaaac |
6023800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 32228205 - 32228012
Alignment:
| Q |
33 |
gttgcttttatttggggagctttcgggtctcacaatgaattttcacaaaattatgctgattggtgcaaacatccctgcttcctggttgtcagaggctgct |
132 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||| || |
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| T |
32228205 |
gttgctttcatttggggagctttcgggtctcacaatgaattttcacaaaagtatgctcactggtgtaaacatccctgcttcctggttgtcagaggctact |
32228106 |
T |
|
| Q |
133 |
atgatgatgagttgtcgcagaggtaccattccttttgtatatttggagctgcctatcggaggtgattctagaaaaatctctttttggaaacctg |
226 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32228105 |
atgatgatgagttgttgcagaggtaccattccttttgtatatttgaagctgcctatcagaggtgattctagaaaaatctctttttggaaacctg |
32228012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 12727365 - 12727254
Alignment:
| Q |
115 |
tggttgtcagaggctgctatgatgatgagttgtcgcagaggtaccattccttttgtatatttggagctgcctatcggaggtgattctagaaaaatctctt |
214 |
Q |
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|
||||| |||||||| |||| | |||||| |||||| |||||| ||||||||||||| ||||| | ||||||||| |||||||||||||||||| | |||| |
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| T |
12727365 |
tggttatcagaggcggctaagttgatgaattgtcgaagaggtgccattccttttgtctatttagggctgcctataggaggtgattctagaaaactttctt |
12727266 |
T |
|
| Q |
215 |
tttggaaacctg |
226 |
Q |
| |
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|||||||||||| |
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| T |
12727265 |
tttggaaacctg |
12727254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 25108677 - 25108873
Alignment:
| Q |
30 |
ggtgttgcttttatttggggagctttcgggtctcacaatgaattttcacaaaattatgctgattggtgcaaacatccctgcttcctggttgtcagaggct |
129 |
Q |
| |
|
|||||||||||||| || ||| || |||||||||| | | ||||||||||| | |||| ||| ||||| ||| || | | ||| |||||||||||||| |
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| T |
25108677 |
ggtgttgcttttatctgaggaactgtcgggtctcaaagtaaattttcacaagagtatgttgactggtgtaaatattctgggttcttggttgtcagaggcc |
25108776 |
T |
|
| Q |
130 |
gctatgatgatgagttgtcgcagaggtaccattccttttgtatatttggagctgcctatcggaggtgattctagaaaaatctctttttggaaacctg |
226 |
Q |
| |
|
||||||||| ||| |||||| ||||| |||||||||||||| ||||||| ||||||||| |||| |||||| | ||| | |||||||||||||||| |
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|
| T |
25108777 |
gctatgatgttgaattgtcgaagaggcaccattccttttgtttatttggggctgcctatatgaggggattctgggaaactttctttttggaaacctg |
25108873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 40903171 - 40903362
Alignment:
| Q |
35 |
tgcttttatttggggagctttcgggtctcacaatgaattttcacaaaattatgctgattggtgcaaacatccctgcttcctggttgtcagaggctgctat |
134 |
Q |
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|
|||||||||||| ||||||||| ||||||| | | ||||| ||||| | |||| ||| ||||| ||| || ||| ||| |||||||| ||||| ||| | |
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| T |
40903171 |
tgcttttatttgaggagctttcaggtctcaaagttaatttccacaagagtatgttgactggtgtaaatattcctatttcgtggttgtctgaggcggcttt |
40903270 |
T |
|
| Q |
135 |
gatgatgagttgtcgcagaggtaccattccttttgtatatttggagctgcctatcggaggtgattctagaaaaatctctttttggaaacctg |
226 |
Q |
| |
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| |||||| |||||| || |||| |||||||||||| ||||||| | ||||||| ||||| |||||| | ||| | |||||||||||||||| |
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| T |
40903271 |
gttgatgaattgtcggaggggtatcattccttttgtttatttggggttgcctattggaggggattctcggaaactttctttttggaaacctg |
40903362 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 32304322 - 32304129
Alignment:
| Q |
30 |
ggtgttgcttttatttggggagctttcgggtctcacaatgaattttcacaaaattatgctgattggtgcaaacatccctgcttcctggttgtcagaggct |
129 |
Q |
| |
|
||||||| | ||||||| |||| | || ||||||| | ||||||| ||||||| ||| ||| ||||| || || || | || ||||| ||||||| |
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| T |
32304322 |
ggtgttgttgttatttgaggagttgtcaggtctcaaagtgaatttccacaaaagcatgttgactggtgttaatattcccgtctcttggttatcagaggtg |
32304223 |
T |
|
| Q |
130 |
gctatgatgatgagttgtcgcagaggtaccattccttttgtatatttggagctgcctatcggaggtgattctagaaaaatctctttttggaaac |
223 |
Q |
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|||| | |||||| |||||| |||||| ||||||||||||| ||||| | ||||||||| |||||||||||||||||| | ||||||||||||| |
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|
| T |
32304222 |
gctaagttgatgaattgtcgaagaggtgccattccttttgtctatttagggctgcctataggaggtgattctagaaaactttctttttggaaac |
32304129 |
T |
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