View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_527 (Length: 227)
Name: NF11737A_low_527
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_527 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 42207564 - 42207790
Alignment:
| Q |
1 |
agtggatttcagactcaaaacaagaactggagtatgtccaagatggttctccaatctcatcttataagataaattggggcatcgaggttcttccttcagt |
100 |
Q |
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| T |
42207564 |
agtggatttcagactcaaaacaagaactgaagtatgtccaagatggttctccaatctcatcttataagataaattggggcatcgaggttcttccttcagt |
42207663 |
T |
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| Q |
101 |
ctctactatatcttcattcattggagcacactgtggcaagtcagaagatgctttttcagcagaacatctgttagaaaccgcagacatagaagagttgaat |
200 |
Q |
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| T |
42207664 |
ctctactatatcttcattcattggaacacactgtggcaagtcagaagatgctttttcagcagaacatctgttagaaaccacagacatagaagagttgaat |
42207763 |
T |
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| Q |
201 |
ggcgatgaaccacttttttggccattt |
227 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
42207764 |
ggcgatgagccacttttttggccattt |
42207790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 42214397 - 42214617
Alignment:
| Q |
1 |
agtggatttcagactcaaaacaagaactggagtatgtccaagatggttctccaatctcatcttataagataaattggggcatcgaggttcttccttcagt |
100 |
Q |
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|||||||||||| |||||||||| ||| ||| ||||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| |
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| T |
42214397 |
agtggatttcaggttcaaaacaaggactacagtgtgtccaacatggttctccaatctcatcatataaggtaaattggggtgccgaggttcttccttcagt |
42214496 |
T |
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| Q |
101 |
ctctactatatcttcattcattggagcacactgtggcaagtcagaagatgctttttcagcagaacatctgttagaaaccgcagacatagaagagttgaat |
200 |
Q |
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|||||| |||||||||| || |||||| |||| ||| | ||||| ||||||||||||||||| | ||||||| ||||||| ||||||||||||| |
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| T |
42214497 |
ctctac---gtcttcattcactgaagcacattgtgaaaagcc---agatgttttttcagcagaacatcggatagaaactgcagacacagaagagttgaat |
42214590 |
T |
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| Q |
201 |
ggcgatgaaccacttttttggccattt |
227 |
Q |
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| T |
42214591 |
ggtgatgaaccacttttttggccattt |
42214617 |
T |
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