View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_530 (Length: 227)
Name: NF11737A_low_530
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_530 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 33081040 - 33080843
Alignment:
| Q |
11 |
tggacatcaagccaacatttcagaacgaaacatcatggttggtgagtatataactatattcaaaactaatttacttatctctataaaattatgtcaacta |
110 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33081040 |
tggacatcaagccaccatttcagaacgaaacatcatggttggtgagtatataactacattcaaaactaatttacttatctctataaaattatgtcaacta |
33080941 |
T |
|
| Q |
111 |
agtttcccaacgatatcaatatttaatcattagaaaaaaggagcaccaagtgtaattatgttcaatgaatgcaaggattgtcatccaatgtagcaaca |
208 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33080940 |
tgtttcccaacgataacaatattttatcattagaaaaaaggagcaccaagtgtaattatgttcaatgaatgctaggattgtcatccaatgtagcaaca |
33080843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University