View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_531 (Length: 227)

Name: NF11737A_low_531
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_531
NF11737A_low_531
[»] chr8 (26 HSPs)
chr8 (16-208)||(17741964-17742156)
chr8 (16-208)||(5735533-5735726)
chr8 (16-198)||(38206612-38206794)
chr8 (16-208)||(13815195-13815388)
chr8 (20-208)||(5212539-5212728)
chr8 (16-208)||(34955298-34955491)
chr8 (16-198)||(1634439-1634621)
chr8 (16-206)||(35099695-35099884)
chr8 (16-169)||(30532166-30532319)
chr8 (52-208)||(18029164-18029321)
chr8 (16-193)||(1957839-1958015)
chr8 (16-193)||(15053910-15054086)
chr8 (16-122)||(7511694-7511800)
chr8 (108-198)||(26244789-26244879)
chr8 (108-198)||(40283767-40283857)
chr8 (107-208)||(44503422-44503522)
chr8 (112-206)||(43618067-43618160)
chr8 (127-208)||(8608007-8608088)
chr8 (143-206)||(8449969-8450032)
chr8 (135-208)||(36912666-36912740)
chr8 (127-208)||(7990687-7990768)
chr8 (127-208)||(38584638-38584719)
chr8 (166-208)||(30289497-30289539)
chr8 (143-208)||(7511805-7511869)
chr8 (146-208)||(43524838-43524900)
chr8 (127-208)||(39810798-39810879)
[»] chr3 (40 HSPs)
chr3 (16-208)||(30692036-30692228)
chr3 (16-208)||(25832354-25832547)
chr3 (16-208)||(42601135-42601328)
chr3 (16-198)||(49028183-49028365)
chr3 (35-208)||(33935240-33935414)
chr3 (16-208)||(33748940-33749133)
chr3 (16-206)||(25790397-25790586)
chr3 (17-208)||(51427350-51427542)
chr3 (16-206)||(17466778-17466967)
chr3 (16-208)||(43474150-43474341)
chr3 (16-208)||(6832646-6832837)
chr3 (52-208)||(25450300-25450457)
chr3 (16-198)||(28154571-28154753)
chr3 (16-193)||(6048312-6048488)
chr3 (16-193)||(30418046-30418222)
chr3 (16-206)||(47144433-47144618)
chr3 (16-208)||(42561159-42561354)
chr3 (16-198)||(21231781-21231963)
chr3 (36-193)||(10426066-10426222)
chr3 (16-208)||(49357143-49357320)
chr3 (58-208)||(7008278-7008427)
chr3 (16-198)||(51973784-51973968)
chr3 (16-122)||(21225634-21225740)
chr3 (16-154)||(50017307-50017444)
chr3 (84-208)||(20139621-20139744)
chr3 (108-208)||(50033919-50034019)
chr3 (106-198)||(51304625-51304717)
chr3 (106-198)||(36178393-36178485)
chr3 (123-208)||(47700796-47700881)
chr3 (123-208)||(51973730-51973815)
chr3 (127-198)||(26165262-26165333)
chr3 (143-206)||(5844887-5844950)
chr3 (152-208)||(49147041-49147097)
chr3 (127-206)||(35423741-35423820)
chr3 (101-193)||(4046260-4046351)
chr3 (143-198)||(47700772-47700827)
chr3 (171-208)||(33795267-33795304)
chr3 (171-208)||(35853005-35853042)
chr3 (171-208)||(43022871-43022908)
chr3 (168-208)||(50017297-50017336)
[»] chr7 (15 HSPs)
chr7 (16-208)||(22191467-22191660)
chr7 (16-206)||(35028731-35028920)
chr7 (16-198)||(26812406-26812588)
chr7 (16-208)||(25218437-25218630)
chr7 (16-198)||(32129863-32130048)
chr7 (17-208)||(1940288-1940479)
chr7 (16-193)||(36518795-36518971)
chr7 (16-193)||(22656951-22657127)
chr7 (16-208)||(40302108-40302302)
chr7 (92-198)||(114797-114903)
chr7 (106-198)||(45549301-45549393)
chr7 (123-208)||(114743-114828)
chr7 (145-208)||(37888111-37888174)
chr7 (127-208)||(25038327-25038408)
chr7 (171-208)||(43570907-43570944)
[»] chr6 (13 HSPs)
chr6 (16-208)||(6380119-6380312)
chr6 (16-206)||(631778-631967)
chr6 (16-208)||(29428153-29428346)
chr6 (16-198)||(24932880-24933062)
chr6 (16-208)||(8219205-8219396)
chr6 (16-193)||(17960880-17961056)
chr6 (16-193)||(34838859-34839035)
chr6 (112-206)||(2503485-2503578)
chr6 (106-161)||(26654068-26654123)
chr6 (106-161)||(26760037-26760092)
chr6 (143-206)||(34328542-34328605)
chr6 (143-208)||(24348689-24348752)
chr6 (171-208)||(6725438-6725475)
[»] chr4 (29 HSPs)
chr4 (16-208)||(53183726-53183919)
chr4 (16-208)||(53347682-53347874)
chr4 (16-206)||(2214905-2215094)
chr4 (16-206)||(46917132-46917321)
chr4 (16-208)||(28899594-28899785)
chr4 (16-208)||(36656807-36656999)
chr4 (16-208)||(12158385-12158577)
chr4 (16-154)||(19409389-19409527)
chr4 (16-208)||(16174636-16174831)
chr4 (16-193)||(3532925-3533101)
chr4 (16-193)||(3618070-3618246)
chr4 (16-193)||(8992063-8992239)
chr4 (16-193)||(13110841-13111017)
chr4 (19-162)||(7401302-7401444)
chr4 (56-198)||(4981798-4981934)
chr4 (106-198)||(13094076-13094168)
chr4 (106-198)||(35809457-35809549)
chr4 (108-198)||(19273076-19273166)
chr4 (108-208)||(47749950-47750050)
chr4 (112-206)||(27142048-27142141)
chr4 (106-180)||(27863989-27864063)
chr4 (143-208)||(33526962-33527027)
chr4 (129-208)||(39533005-39533084)
chr4 (127-208)||(34564384-34564465)
chr4 (152-208)||(54356643-54356699)
chr4 (171-208)||(19409379-19409416)
chr4 (127-208)||(51392474-51392555)
chr4 (127-208)||(2112582-2112661)
chr4 (171-208)||(55408336-55408373)
[»] chr5 (21 HSPs)
chr5 (16-198)||(10569390-10569572)
chr5 (16-208)||(4577253-4577446)
chr5 (16-208)||(25032603-25032796)
chr5 (24-208)||(34710123-34710306)
chr5 (16-208)||(30647734-30647924)
chr5 (16-208)||(27406663-27406853)
chr5 (16-193)||(27942770-27942946)
chr5 (16-193)||(40889174-40889350)
chr5 (16-206)||(31013476-31013658)
chr5 (16-193)||(32976186-32976369)
chr5 (75-198)||(29618671-29618794)
chr5 (106-198)||(13479508-13479600)
chr5 (61-193)||(23648845-23648976)
chr5 (61-193)||(23809596-23809727)
chr5 (108-198)||(39238706-39238796)
chr5 (112-198)||(3455025-3455111)
chr5 (124-208)||(10569542-10569626)
chr5 (146-208)||(177317-177379)
chr5 (143-208)||(41263611-41263677)
chr5 (143-208)||(14279090-14279155)
chr5 (129-208)||(34918203-34918281)
[»] chr2 (26 HSPs)
chr2 (16-208)||(5146341-5146533)
chr2 (16-206)||(12855281-12855470)
chr2 (16-206)||(8852319-8852508)
chr2 (16-208)||(36855403-36855596)
chr2 (18-208)||(31192631-31192805)
chr2 (16-154)||(2780418-2780556)
chr2 (16-193)||(7588119-7588295)
chr2 (16-193)||(22351230-22351406)
chr2 (16-193)||(30822199-30822375)
chr2 (85-208)||(31173885-31174008)
chr2 (16-122)||(6363272-6363378)
chr2 (16-120)||(39433612-39433716)
chr2 (106-208)||(39433732-39433835)
chr2 (103-197)||(926876-926970)
chr2 (109-204)||(7763203-7763298)
chr2 (116-208)||(1987368-1987461)
chr2 (116-208)||(16218581-16218673)
chr2 (143-208)||(38901966-38902031)
chr2 (143-208)||(43495123-43495188)
chr2 (129-208)||(6333113-6333192)
chr2 (16-104)||(40881345-40881429)
chr2 (112-206)||(4296490-4296583)
chr2 (143-208)||(37245752-37245818)
chr2 (101-193)||(44280258-44280349)
chr2 (157-208)||(6363203-6363254)
chr2 (171-208)||(2780529-2780566)
[»] chr1 (25 HSPs)
chr1 (16-208)||(17680882-17681073)
chr1 (16-206)||(31468389-31468578)
chr1 (16-198)||(33164702-33164884)
chr1 (16-208)||(10266578-10266769)
chr1 (18-208)||(36230765-36230954)
chr1 (16-208)||(47300118-47300309)
chr1 (16-208)||(17783622-17783815)
chr1 (16-208)||(45455773-45455964)
chr1 (16-193)||(2477945-2478121)
chr1 (16-193)||(45239415-45239591)
chr1 (16-193)||(48387724-48387900)
chr1 (16-193)||(48404605-48404781)
chr1 (16-208)||(8468579-8468770)
chr1 (16-208)||(51520456-51520645)
chr1 (78-208)||(43739233-43739362)
chr1 (108-208)||(44929007-44929108)
chr1 (92-208)||(23093024-23093143)
chr1 (109-204)||(45362957-45363052)
chr1 (143-206)||(37646304-37646367)
chr1 (143-208)||(37822822-37822887)
chr1 (127-208)||(40500655-40500736)
chr1 (143-206)||(27630207-27630270)
chr1 (143-198)||(29523980-29524035)
chr1 (143-206)||(37420091-37420154)
chr1 (143-198)||(38212565-38212620)
[»] scaffold0100 (1 HSPs)
scaffold0100 (16-208)||(30165-30347)
[»] scaffold0007 (1 HSPs)
scaffold0007 (16-198)||(170147-170329)
[»] scaffold0362 (1 HSPs)
scaffold0362 (16-208)||(4941-5136)
[»] scaffold0054 (1 HSPs)
scaffold0054 (76-208)||(56811-56946)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 17742156 - 17741964
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17742156 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtatcgtgattgaagatgatttctatcgtactaaataaattacttgt 17742057  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||||||||||||||| ||| |||||||| |||| ||||||||||||| ||||||| |||||||| |||||||||||||||||||||    
T  17742056 gtgttgtatgcttagtttgttgtattgcattttaaattatttgtgtgccgcgtgcttagttttttgtattgcattttaagttaagaaaataaa 17741964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 5735726 - 5735533
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  5735726 catcacgaattgcaagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgt 5735627  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||| ||| |||||||||    
T  5735626 gtgttttatgcttagtttgttgtattgcattttaagttatttgtgtgccgcgtgcttagtttgttgtacttgcattttaaattaggaaaataaa 5735533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 38206612 - 38206794
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||    
T  38206612 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtatggtgattgaagatgatttgtatcgtactaaataaattacttgt 38206711  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    |||||||||||||||||||||   || ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  38206712 gtgttgtatgcttagtttgttatcttccattttaagttatttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 38206794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 13815388 - 13815195
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  13815388 catcacgaattgcaagcagatctagtgaaacacatatggacaaagtttgaaatgtatcgtgattgaagatgatttgtatcctactaaataaattacttgt 13815289  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  13815288 gtgttttatgcttagtttgttgtattgcattttaagttatttgtgtgccgcgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 13815195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 5212728 - 5212539
Alignment:
Q  20 acgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgt 119  Q
    |||||||  |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  5212728 acgaattacaagcagatctagtgaaacacatacggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgt 5212629  T
Q  120 tgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    | |||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||| || |||||||||||||    
T  5212628 tttatgcttagtttgttgtattgcattttaagttatttgtgtgccgcgtgcttagtttgttgtacttgaatttaaaattaagaaaataaa 5212539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 34955298 - 34955491
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  34955298 catcacgaattgcaagcagatcaagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgt 34955397  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||||| |||| ||||||||||| ||| ||||||||||||| |||||| |||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  34955398 gtgttttatggttagtttgttgtattgcattttaagttatttgtgtgtcgcgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 34955491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 1634439 - 1634621
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| | ||||||||||||||||||||||    
T  1634439 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtatagtgattgaagatgatttgtttcgtactaaataaattacttgt 1634538  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||||||||||||  || ||||||||||||| ||||||  |||||||||||||||||| ||  |||||||||||    
T  1634539 gtgttgtatgcttagtttgttgtcttccattttaagttatttgtgtgttgcgtgtttagtttgttgtctttcattttaagtta 1634621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 35099884 - 35099695
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  35099884 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgt 35099785  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| ||||||  || || |||||||||||||||| |||||||||||||||||||    
T  35099784 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcatgcttagtttgttgtattgcattttaagttaagaaaata 35099695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 30532166 - 30532319
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  30532166 catcacgaattgtaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattaaagatgatttgtatcgtactaaataaattacttgt 30532265  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtg 169  Q
    |||||||||||||||||||||   || ||||||||||||| |||||| ||||||    
T  30532266 gtgttgtatgcttagtttgttatcttgcattttaagttatttgtgtgtcgcgtg 30532319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 52 - 208
Target Start/End: Original strand, 18029164 - 18029321
Alignment:
Q  52 tggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaag 151  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  18029164 tggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgtattgcattttaag 18029263  T
Q  152 ttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    |||| ||||||  ||| | ||||||||||||| ||| ||||||| |||||||||||||    
T  18029264 ttatttgtgtgttgcgagcttagtttgttgtacttgcattttaaattaagaaaataaa 18029321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 1957839 - 1958015
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  1957839 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 1957938  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  1957939 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 1958015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 15054086 - 15053910
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||||| ||||||||||||    
T  15054086 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcgcgattgaagatgatttgtatcgtactaagtaaattacttgt 15053987  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  15053986 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 15053910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 7511694 - 7511800
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  7511694 catcatgaattacaagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgt 7511793  T
Q  116 gtgttgt 122  Q
     ||||||    
T  7511794 ttgttgt 7511800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 26244879 - 26244789
Alignment:
Q  108 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  26244879 ttacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 26244789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 40283857 - 40283767
Alignment:
Q  108 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    |||||||||||||||| |||||||||||||  || ||||||||||||| |||||  ||||||||||||||||||| ||| |||||||||||    
T  40283857 ttacttgtgtgttgtacgcttagtttgttgtcttccattttaagttatttgtgtatcgcgtgtttagtttgttgtcttgcattttaagtta 40283767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 44503522 - 44503422
Alignment:
Q  107 attacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    |||| ||||||||||| ||||| ||||||||  || ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  44503522 attatttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 44503424  T
Q  207 aa 208  Q
    ||    
T  44503423 aa 44503422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 43618067 - 43618160
Alignment:
Q  112 ttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||||||| ||||| ||||||||  || ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  43618067 ttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 43618160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 8608007 - 8608088
Alignment:
Q  127 ttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||| |||||| || |||||||| |||| |||||| |||||| ||||||| |||||||| ||||||||| |||||||||||    
T  8608007 ttagtatgttgccttgcattttaaattatttgtgtgacgcgtgcttagtttattgtattgcattttaagtaaagaaaataaa 8608088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 8449969 - 8450032
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  8449969 cattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 8450032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 36912740 - 36912666
Alignment:
Q  135 ttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||||||| ||||||||||||| |||||| || ||| ||||||||||||| ||| ||||||| |||||||||||||    
T  36912740 ttgcattgcattttaagttatttgtgtgtcgtgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 36912666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 7990768 - 7990687
Alignment:
Q  127 ttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||| |||||| || |||||||| |||| |||||| |||||| ||||||  |||||||| ||||||| |||||||||||||    
T  7990768 ttagtatgttgccttgcattttaaattatttgtgtgtcgcgtgcttagttgattgtattgcattttaaattaagaaaataaa 7990687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 38584638 - 38584719
Alignment:
Q  127 ttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||| |||||| || |||||||| |||| || ||| |||||| ||| ||| |||||||| |||||||||||||||||||||    
T  38584638 ttagtatgttgccttgcattttaaattatttgcgtgtcgcgtgcttaatttattgtattgcattttaagttaagaaaataaa 38584719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 30289497 - 30289539
Alignment:
Q  166 cgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  30289497 cgtgcttagtttgttgtattgcattttaagttaagaaaataaa 30289539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 7511805 - 7511869
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||||| ||| | |||| || ||| |||||||||||||||| |||||||||||||||||||||    
T  7511805 cattttaagctattt-tgtgtcgtgtgcttagtttgttgtattgcattttaagttaagaaaataaa 7511869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 43524838 - 43524900
Alignment:
Q  146 tttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||| ||| |||||| | |||  ||| |||||||||||| |||||||||||||||||||||    
T  43524838 tttaagctatttgtgtgactcgtacttaatttgttgtattgtattttaagttaagaaaataaa 43524900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 39810798 - 39810879
Alignment:
Q  127 ttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||| |||||| ||  ||||||| || |||||||| | |||| |||| || |||||||  |||||||||||||||||||||    
T  39810798 ttagtatgttgccttgtattttaaattttctgtgtgtctcgtgcttagcttattgtattacattttaagttaagaaaataaa 39810879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 30692036 - 30692228
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  30692036 catcacgaattgcaagcagacctagtgaagcacatatggacaaagtttggaatgtatcgtgattgaagatgatttctatcgtactaaataaattacttgc 30692135  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||||||||||||||| ||| ||||||||||||| |||||| ||| || |||||||||||||||| |||||||||||||||||||||    
T  30692136 gtgttgtatgcttagtttgttgtattgcattttaagttatttgtgtgtcgcatgcttagtttgttgtattgcattttaagttaagaaaataaa 30692228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 25832354 - 25832547
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  25832354 catcacgaattgcaagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgt 25832453  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||| || |||||||||||||    
T  25832454 gtgttttatgcttagtttgttgtattgcattttaagttatttgtgtgccgcgtgcttagtttgttgtacttgaatttgaaattaagaaaataaa 25832547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 42601135 - 42601328
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  42601135 catcacgaattgcaagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgt 42601234  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||| || |||||||||||||    
T  42601235 gtgttttatgcttagtttgttgtattgcattttaagttatttgtgtgccgcgtgcttagtttgttgtacttgaatttgaaattaagaaaataaa 42601328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 49028183 - 49028365
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||    
T  49028183 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtatagtgattgaagatgatttgtatcgtactaaataaattacttgt 49028282  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||||||||||||  || ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  49028283 gtgttgtatgcttagtttgttgtcttgcattttaagttatttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 49028365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 35 - 208
Target Start/End: Complemental strand, 33935414 - 33935240
Alignment:
Q  35 atctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttg 134  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33935414 atctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgcttagtttg 33935315  T
Q  135 ttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||| ||| ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||||||||    
T  33935314 ttgtattgcattttaagttatttgtgtgccgcgtgtttagtttgttgtacttgcattttaaattaagaaaataaa 33935240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 33749133 - 33748940
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  33749133 catcacgaattgcaagcagatctagtgaaacagatatggacaaagtttggaatgtatcgtggttgaagatgatttgtatcgtactaaataaattacttgt 33749034  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    |||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  33749033 gtgttgtatgcttagttttttgtattgcattttaagttatttgtgtgccgcgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 33748940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 25790397 - 25790586
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  25790397 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgt 25790496  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  25790497 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 25790586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 51427542 - 51427350
Alignment:
Q  17 atcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtg 116  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  51427542 atcacgaattacaagcagatctagtgaaacacatatggacaaagtttggaatgtatcgcgattgaagatgatttgtatcgtactaaataaattacttgtg 51427443  T
Q  117 tgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    |||| |||||||||||||||| ||| ||||||||||||| |||||| |||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  51427442 tgttttatgcttagtttgttgtattgcattttaagttatttgtgtgtcgcgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 51427350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 17466967 - 17466778
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  17466967 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgt 17466868  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||| ||||| ||||| ||  || ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  17466867 gtgttgtgtgctt-gtttgctgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 17466778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 43474341 - 43474150
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  43474341 catcacgaattgcaagcagatctagtgaaggacatatggacaaagtttgaaatgtttcgtgattgaagatgatttatatcgtactaaataaattacttgt 43474242  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  43474241 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacgcgtgcttagtttgttgtattgcattttaagttaagaaaataaa 43474150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 6832837 - 6832646
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  6832837 catcacgaattacaagcagatctagtgaagcaaatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgt 6832738  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| |||||| |||||||||||||| | |||||||||||||||||||||    
T  6832737 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgtcgcgtgcttagtttgttgtatagcattttaagttaagaaaataaa 6832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 52 - 208
Target Start/End: Original strand, 25450300 - 25450457
Alignment:
Q  52 tggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaag 151  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  25450300 tggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgtattgcattttaag 25450399  T
Q  152 ttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    |||| ||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  25450400 ttatttgtgtgccgcgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 25450457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 28154571 - 28154753
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||| |||||    
T  28154571 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtatagtgattgaagatgatttgtattgtactaaataaattccttgt 28154670  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    |||||||||| ||||||| ||   || ||||||||||||| |||||| | ||||||||||||||||| ||| |||||||||||    
T  28154671 gtgttgtatgtttagtttattatcttgcattttaagttatttgtgtgtcacgtgtttagtttgttgtcttgcattttaagtta 28154753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 6048312 - 6048488
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||    
T  6048312 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgt 6048411  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  6048412 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 6048488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 30418046 - 30418222
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  30418046 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 30418145  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  30418146 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 30418222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 47144618 - 47144433
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||    ||||||| ||||    
T  47144618 catcacgaattgcaagcagatctagtgaagcacatatggacaaaatttggaatgtttcatgattgaagatgatttgtattgtac----taaattatttgt 47144523  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  47144522 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 47144433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 42561354 - 42561159
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||||||||||||||||||||| |    
T  42561354 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttgaaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttct 42561255  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaat----tttaagttaagaaaataaa 208  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||  | |||  |||||||||| ||||| ||    |||||||||||||||||||    
T  42561254 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtaacccgtacttagtttgttctattgcattttatttaagttaagaaaataaa 42561159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 21231781 - 21231963
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    ||||| |||||| ||||||||||||||||| | ||||||||| | |||||||||| || |||||||||||||||| ||||||||||| ||| ||||||||    
T  21231781 catcatgaattgcaagcagatctagtgaagaatatatggacacaatttggaatgtttcgtgattgaagatgatttgtatcgtactaattaagttacttgt 21231880  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||| ||||||||||||||  || ||||||||| ||| ||||||||||||  ||||||| |||||||  |||| ||||||    
T  21231881 gtgttgtgtgcttagtttgttgtcttacattttaaggtatttgtgtgccgcgttcttagtttattgtattccatttaaagtta 21231963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 10426066 - 10426222
Alignment:
Q  36 tctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgt 135  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||    
T  10426066 tctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgtgtgttgtgtgctt-gtttgt 10426164  T
Q  136 tgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  10426165 tgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 10426222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 49357143 - 49357320
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  49357143 catcacgaattgcaagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtattgtactaaataaattacttgt 49357242  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    |||||||||                | ||||||||||||| |||||| |||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  49357243 gtgttgtat----------------tgcattttaagttatttgtgtgtcgcgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 49357320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 208
Target Start/End: Complemental strand, 7008427 - 7008278
Alignment:
Q  58 aagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatct 157  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||| |||  || | ||||||| ||| |    
T  7008427 aagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt-gtttcttgtcttgcgttttaagctattt 7008329  T
Q  158 gtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||| | |||| |||||||||||||||| |||||||||||||||||||||    
T  7008328 gtgtgacccgtgcttagtttgttgtattgcattttaagttaagaaaataaa 7008278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 51973968 - 51973784
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatat--ggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattactt 113  Q
    |||||||||||| ||||||||||||||||||||||||  |||||| ||||| ||||| || |||||||||||||||| ||| ||||||| ||| ||||||    
T  51973968 catcacgaattgcaagcagatctagtgaagcacatatatggacaatgtttgaaatgtttcgtgattgaagatgatttgtattgtactaattaagttactt 51973869  T
Q  114 gtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||| | ||||||||||||  || ||||||||||||| ||| || | | || |||||||||||| ||  |||||||||||    
T  51973868 gtgtgttgtgttcttagtttgttgtcttgcattttaagttatttgtatgtcacatgcttagtttgttgtctttcattttaagtta 51973784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 21225740 - 21225634
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||| ||||||||    
T  21225740 catcacgaattgcaagcagatctagtgaagctcatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaattaagttacttgt 21225641  T
Q  116 gtgttgt 122  Q
    |||||||    
T  21225640 gtgttgt 21225634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 50017444 - 50017307
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||  |||||||| ||||||| |||||||||||||| ||||||||     
T  50017444 catcacaaattgcaagcagatctagtgaaacacatatggataaagtttggaatgtattgtgattgaaaatgatttgtatcgtactaaatatattacttgc 50017345  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagtta 154  Q
    || ||||||| ||||||| ||| |||  |||||||||||    
T  50017344 gtattgtatgtttagttt-ttgtattgtattttaagtta 50017307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 20139744 - 20139621
Alignment:
Q  84 atgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta 183  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||  || ||||||||  ||| |||||||| | |||||||||| |||||    
T  20139744 atgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaaactatttgtgtgccacatgtttagtttcttgta 20139646  T
Q  184 ttgaattttaagttaagaaaataaa 208  Q
    ||| |||||||||||||||||||||    
T  20139645 ttgcattttaagttaagaaaataaa 20139621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 50034019 - 50033919
Alignment:
Q  108 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataa 207  Q
    |||||||||||||||||||||||||||||| ||| |||||||| || | ||||||||||||| ||| |||||||||||| ||||||| ||||||||||||    
T  50034019 ttacttgtgtgttgtatgcttagtttgttgtattgcattttaaattttttgtgtgccgcgtgcttaatttgttgtattgtattttaaattaagaaaataa 50033920  T
Q  208 a 208  Q
    |    
T  50033919 a 50033919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 51304717 - 51304625
Alignment:
Q  106 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  51304717 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 51304625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 36178393 - 36178485
Alignment:
Q  106 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    |||||||||||||||||||| ||||||||| |  || ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  36178393 aattacttgtgtgttgtatgattagtttgtcgtcttccattttaagttatttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 36178485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 47700796 - 47700881
Alignment:
Q  123 atgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||||||||||| ||| ||||||||||||| ||||   |||||| |||||||||||||||| |||||||||||||||||||||    
T  47700796 atgcttagtttgttgtattgcattttaagttatttgtgcttcgcgtgcttagtttgttgtattgcattttaagttaagaaaataaa 47700881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 51973815 - 51973730
Alignment:
Q  123 atgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||||||||  |||||||||||||||| | |||| |||||| ||| ||| |||||||| |||||||||||||||||||||    
T  51973815 atgcttagtttgttgtctttcattttaagttatttatgtgtcgcgtgcttaatttattgtattgtattttaagttaagaaaataaa 51973730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 26165262 - 26165333
Alignment:
Q  127 ttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    |||||||||||  || ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  26165262 ttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 26165333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 5844887 - 5844950
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  5844887 cattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 5844950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 49147041 - 49147097
Alignment:
Q  152 ttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||| |||||| |||||| |||||||||||||||  |||||||||||||||||||||    
T  49147041 ttatttgtgtgtcgcgtgcttagtttgttgtattacattttaagttaagaaaataaa 49147097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 35423741 - 35423820
Alignment:
Q  127 ttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||| |||||| || |||||||| |||| ||||||  ||||| ||||||| || ||||| |||||||||||||||||||    
T  35423741 ttagtatgttgccttgcattttaatttatttgtgtgatgcgtgcttagtttattatattgcattttaagttaagaaaata 35423820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 4046351 - 4046260
Alignment:
Q  101 aaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||||||| |||||||||| || || ||||||||  || ||||||||| ||| |||||| | | | ||||||||||||||||| ||||||    
T  4046351 aaataaattacatgtgtgttgtgtgttt-gtttgttgtcttgcattttaagctatttgtgtgacccttatttagtttgttgtattgcatttta 4046260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 47700772 - 47700827
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||| ||||||  |||||||||| || |||||||||||||||| |||||||||||    
T  47700772 catttgaagttagttgtgtgccgcatgcttagtttgttgtattgcattttaagtta 47700827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 33795267 - 33795304
Alignment:
Q  171 ttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  33795267 ttagtttgttgtattgcattttaagttaagagaataaa 33795304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 35853005 - 35853042
Alignment:
Q  171 ttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  35853005 ttagattgttgtattgcattttaagttaagaaaataaa 35853042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 43022908 - 43022871
Alignment:
Q  171 ttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  43022908 ttagattgttgtattgcattttaagttaagaaaataaa 43022871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 50017336 - 50017297
Alignment:
Q  168 tgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  50017336 tgtttagttt-ttgtattgtattttaagttaagaaaataaa 50017297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 22191660 - 22191467
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  22191660 catcacgaattgcaagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgt 22191561  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  22191560 gtgttgtatgcttagtttgttgtattgcattttaagttatttgtgtgccgcgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 22191467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 35028731 - 35028920
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  35028731 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgt 35028830  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||| ||||| ||||||||  || ||||||||||||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  35028831 gtgttgtgtgctt-gtttgttgtcttgcattttaagttatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 35028920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 26812588 - 26812406
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| ||||||||||||||||||| ||||    
T  26812588 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaaagtatagtgattgaagatgatttgtatcgtactaaataaattagttgt 26812489  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    |||||||||| |||||||||||  || ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  26812488 gtgttgtatgtttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 26812406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 25218437 - 25218630
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  25218437 catcacgaattgcaagcagatctagtgaaacacatatcgacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgt 25218536  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    |||||||||| ||||||| ||| ||| ||||||| ||||| |||||| || ||| ||||||||||||| ||| ||||||| |||||||||||||    
T  25218537 gtgttgtatgattagttttttgtattgcattttatgttatttgtgtgtcgtgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 25218630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 32129863 - 32130048
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||    
T  32129863 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtatagtgattgaagatgatttgtatcgtactaaataaattacttgt 32129962  T
Q  116 gtgttgtatgcttagtttgtt----gcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    |||||||||||||||||||||    |  || ||||||||||||| |||| | ||||||||||||||||||| ||| |||||||||||    
T  32129963 gtgttgtatgcttagtttgtttgttgtcttccattttaagttatttgtg-gtcgcgtgtttagtttgttgtcttgcattttaagtta 32130048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 1940288 - 1940479
Alignment:
Q  17 atcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtg 116  Q
    |||| |||||| ||||||||||||||||  |||||||| ||||||||||||||| || |||||||||||||||| |||| |||||| ||| |||||||||    
T  1940288 atcatgaattgcaagcagatctagtgaaagacatatgggcaaagtttggaatgtttcgtgattgaagatgatttgtatcatactaattaagttacttgtg 1940387  T
Q  117 tgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||| ||||||||||||||  || ||| ||||||||| |||||| |||||| ||||||| |||||||| |||||||||||||||||||||    
T  1940388 tgttgtgtgcttagtttgttgtcttgcatcttaagttatttgtgtgtcgcgtgcttagtttattgtattgcattttaagttaagaaaataaa 1940479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 36518971 - 36518795
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  36518971 catcacgaattgcaagcagatctagtgaagcacatatggataaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 36518872  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | ||| ||||||||||||||||| ||||||    
T  36518871 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtatttagtttgttgtattgcatttta 36518795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 22657127 - 22656951
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||    
T  22657127 catcgcgaattgcaagcaaatctagtgaagcacatatggacaaagtttgaaatgtttcgtgattgaatatgatttctatcgtactaaataaattacttgt 22657028  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  22657027 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgtatttta 22656951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 40302108 - 40302302
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| | ||||||||||||||||||||||||    
T  40302108 catcacaaattgcaagcagatctagtgaagcacatatggacaaagtttgaaatgtttcgtgattgaagatgatctgtatcgtactaaataaattacttgt 40302207  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaat----tttaagttaagaaaataaa 208  Q
    ||||||| |||||  ||||||   || ||||||||| ||| |||||| | | |  |||||||||||||||| ||    |||||||||||||||||||    
T  40302208 gtgttgtgtgctt-ttttgttatcttgcattttaagctatttgtgtgac-cctacttagtttgttgtattgcattttatttaagttaagaaaataaa 40302302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 114903 - 114797
Alignment:
Q  92 tatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattt 191  Q
    |||||||||||||||| ||||||||||||||||||||||||||||   || ||||||||||||| |||||||| | || |||||||||||||||| ||||    
T  114903 tatcgtactaaataaaatacttgtgtgttgtatgcttagtttgttttcttgcattttaagttatttgtgtgccacatgcttagtttgttgtattgcattt 114804  T
Q  192 taagtta 198  Q
    |||||||    
T  114803 taagtta 114797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 45549301 - 45549393
Alignment:
Q  106 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  45549301 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 45549393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 114828 - 114743
Alignment:
Q  123 atgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||||||||||| ||| ||||||||||||| ||| |  ||| || ||||||||||||||||||||||||||||||||||||||    
T  114828 atgcttagtttgttgtattgcattttaagttatttgtttatcgcatgcttagtttgttgtattgaattttaagttaagaaaataaa 114743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 37888174 - 37888111
Alignment:
Q  145 ttttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||| ||| |||||| | |||| |||||||||||||||| |||||||||||||||||||||    
T  37888174 ttttaagctatttgtgtgacccgtgcttagtttgttgtattgcattttaagttaagaaaataaa 37888111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 25038327 - 25038408
Alignment:
Q  127 ttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||| |||||| || |||||||| |||| ||| || || ||| ||||||| |||||||| |||||||||||||||||||||    
T  25038327 ttagtatgttgccttgcattttaaattatttgtttgtcgtgtgcttagtttattgtattgcattttaagttaagaaaataaa 25038408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 43570907 - 43570944
Alignment:
Q  171 ttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  43570907 ttagattgttgtattgcattttaagttaagaaaataaa 43570944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 6380119 - 6380312
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  6380119 catcacgaattgcaagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgt 6380218  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||| || |||||||||||||    
T  6380219 gtgttttatgcttagtttgttgtattgcattttaagttatttgtgtgccgcgtgcttagtttgttgtacttgaatttgaaattaagaaaataaa 6380312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 631967 - 631778
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  631967 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgt 631868  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  631867 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 631778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 29428153 - 29428346
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||    
T  29428153 catcacgaattgcaagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacctgt 29428252  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||| |||||||||||||| ||| |||  |||||||||||| ||||||||||||| ||||||||||||| ||| |||||||  ||||||||||||    
T  29428253 gtgctgtatgcttagttttttgtattgtattttaagttatttgtgtgccgcgtgcttagtttgttgtacttgtattttaaaataagaaaataaa 29428346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 24932880 - 24933062
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| |||    
T  24932880 catcacaaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtatagtgattgaagatgatttgtatcgtactaaataaattacctgt 24932979  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    | ||| ||||||||||||||||  || ||||||||||||| ||||||  |||||||||||||||||| ||| |||||||||||    
T  24932980 gcgttctatgcttagtttgttgtcttccattttaagttatttgtgtgttgcgtgtttagtttgttgtcttgcattttaagtta 24933062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 8219396 - 8219205
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||| | ||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  8219396 catcacgaattgcaagcagatattgtgaagcgcatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgt 8219297  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| || ||| |||||||||||||||| |||||||||||||||||||||    
T  8219296 gtgttgtgtgctt-gtttgttgtcttacattttaagctatttgtgtgtcgagtgcttagtttgttgtattgcattttaagttaagaaaataaa 8219205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 17960880 - 17961056
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  17960880 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 17960979  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  17960980 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 17961056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 34839035 - 34838859
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  34839035 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 34838936  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  34838935 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 34838859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 2503578 - 2503485
Alignment:
Q  112 ttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||||||| ||||| ||||||||  || ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  2503578 ttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 2503485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 26654068 - 26654123
Alignment:
Q  106 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgt 161  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||    
T  26654068 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgt 26654123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 26760037 - 26760092
Alignment:
Q  106 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgt 161  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||    
T  26760037 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgt 26760092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 34328605 - 34328542
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  34328605 cattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 34328542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 24348752 - 24348689
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||||||||| |||||  ||| || |||||||||||||||| |||||||||||||||||||||    
T  24348752 cattttaagttatttgtgt--cgcatgcttagtttgttgtattgcattttaagttaagaaaataaa 24348689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 6725438 - 6725475
Alignment:
Q  171 ttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  6725438 ttagattgttgtattgcattttaagttaagaaaataaa 6725475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 53183726 - 53183919
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  53183726 catcacgaattgcaagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgt 53183825  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||| || |||||||||||||    
T  53183826 gtgttttatgcttagtttgttgtattgcattttaagttatttgtgtgccgcgtgcttagtttgttgtacttgaatttgaaattaagaaaataaa 53183919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 53347682 - 53347874
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| ||||    
T  53347682 catcacgaattgcaagcagatctagtgaagcccatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatggtactaaataaattatttgt 53347781  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||||||||||||||||||  || ||||||||||||| |||||| ||| ||||||||||||||||||| |||||||||| ||||||||||    
T  53347782 gtgttgtatgcttagtttgttgtcttgcattttaagttatttgtgtgtcgcatgtttagtttgttgtattgtattttaagttgagaaaataaa 53347874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 2214905 - 2215094
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  2214905 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgt 2215004  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  2215005 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 2215094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 46917132 - 46917321
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  46917132 catcacgaattgtaagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgt 46917231  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  46917232 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 46917321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 28899785 - 28899594
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  28899785 catcacgaattgcaagcagatctagtgaagcacatacggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgt 28899686  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  28899685 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgtcgcgtgcttagtttgttgtattgcattttaagttaagaaaataaa 28899594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 36656999 - 36656807
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||| ||||| || ||||||||||||| |||||||||| ||||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||    
T  36656999 catcacaaattgcaaacagatctagtgaaacacatatggataaagtttggaatgtaccgtgattgaagatgatttgtatcgtattaaataaattacttgt 36656900  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||||||||||||||| ||| ||||||||||| | |||||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  36656899 gtgttgtatgcttagtttgttgtattgcattttaagttgtttgtgtgtcgcgtgcttagtttgttgtattgcattttaagttaagaaaataaa 36656807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 12158577 - 12158385
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||    
T  12158577 catcatgaattgcaagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgta-cgtactaaataaattacttgt 12158479  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||| |||||||||| ||| ||| ||| ||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  12158478 gtgctgtatgcttaattttttgtattgcattttaagttatttgtgtgccgcgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 12158385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 19409527 - 19409389
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19409527 catcatgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtatcgtgattgaagatgatttctatcgtactaaataaattacttgt 19409428  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagtta 154  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  19409427 gtgttgtatgcttagtttgttgtattgcattttaagtta 19409389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 16174636 - 16174831
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  16174636 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgt 16174735  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaat----tttaagttaagaaaataaa 208  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||  | |||  |||||||||||||||| ||    |||||||||||||||||||    
T  16174736 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtcacccgtacttagtttgttgtattgcattttatttaagttaagaaaataaa 16174831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 3532925 - 3533101
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||    
T  3532925 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgt 3533024  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  3533025 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 3533101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 3618070 - 3618246
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  3618070 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 3618169  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  3618170 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 3618246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 8992239 - 8992063
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  8992239 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 8992140  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  8992139 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 8992063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 13111017 - 13110841
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  13111017 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 13110918  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  13110917 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 13110841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 7401444 - 7401302
Alignment:
Q  19 cacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtg 118  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  7401444 cacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtattaaataaattacttgtgtg 7401345  T
Q  119 ttgtatgcttagtttgttgcatttcattttaagttatctgtgtg 162  Q
    |||| ||||| ||||||||  || ||||||||| ||| ||||||    
T  7401344 ttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtg 7401302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 198
Target Start/End: Complemental strand, 4981934 - 4981798
Alignment:
Q  56 caaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttat 155  Q
    ||||||||||||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    ||  ||||||||||    
T  4981934 caaagtttggaatctatagtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgcttagtttgttg----tc--tttaagttat 4981841  T
Q  156 ctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
     |||||| ||||||||||||||||||| ||| |||||||||||    
T  4981840 ttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 4981798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 13094076 - 13094168
Alignment:
Q  106 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  13094076 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 13094168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 35809549 - 35809457
Alignment:
Q  106 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  35809549 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 35809457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 19273166 - 19273076
Alignment:
Q  108 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||||||||||||||||||||  || |||||||| |||| |||||  ||||||||||||||||||| ||| |||||||||||    
T  19273166 ttacttgtgtgttgtatgcttagtttgttgtcttccattttaatttatttgtgtttcgcgtgtttagtttgttgtcttgcattttaagtta 19273076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 47749950 - 47750050
Alignment:
Q  108 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaata 206  Q
    ||||||||||| |||||||||||||| ||| ||| ||||||||||||| || |||||||||| ||| ||||||||| ||| ||||||| |||||||||||    
T  47749950 ttacttgtgtgctgtatgcttagttttttgtattgcattttaagttatttg-gtgccgcgtgcttaatttgttgtacttgcattttaaattaagaaaata 47750048  T
Q  207 aa 208  Q
    ||    
T  47750049 aa 47750050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 27142048 - 27142141
Alignment:
Q  112 ttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||||||| ||||| ||||||||  || ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  27142048 ttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 27142141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 27864063 - 27863989
Alignment:
Q  106 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgtt 180  Q
    |||||||||||||||||| |||||||||||||  || ||||||||||||| |||||| |||||||||| ||||||    
T  27864063 aattacttgtgtgttgtacgcttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgtttaatttgtt 27863989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 33527027 - 33526962
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||| |||| |||||| |||||| ||||||| |||||||| |||||||||||||||||||||    
T  33527027 cattttaaattatttgtgtgtcgcgtgcttagtttattgtattgtattttaagttaagaaaataaa 33526962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 39533005 - 39533084
Alignment:
Q  129 agtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||  || ||||||||||||| |||| | || ||| ||||||| |||||||| |||||||||||||||||||||    
T  39533005 agtttgttgtcttgcattttaagttatttgtgggtcgtgtgcttagtttattgtattgcattttaagttaagaaaataaa 39533084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 34564465 - 34564384
Alignment:
Q  127 ttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||| |||||| || ||||| || |||| ||||||||||||| |||  || |||||||| |||||||||||||||||||||    
T  34564465 ttagtatgttgccttgcatttcaaattatttgtgtgccgcgtgcttaacttattgtattgcattttaagttaagaaaataaa 34564384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 54356643 - 54356699
Alignment:
Q  152 ttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||| |||||| |||||| |||||||||||||||  |||||||||||||||||||||    
T  54356643 ttatttgtgtgtcgcgtgcttagtttgttgtattatattttaagttaagaaaataaa 54356699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 19409416 - 19409379
Alignment:
Q  171 ttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||||||||| |||||||||||||||||||||    
T  19409416 ttagtttgttgtattgcattttaagttaagaaaataaa 19409379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 51392555 - 51392474
Alignment:
Q  127 ttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||| |||||| ||  ||||||| |||| || ||| |||||| ||| ||| |||||||| |||||||||||||||||||||    
T  51392555 ttagtatgttgccttgtattttaaattatttgcgtgtcgcgtgcttaatttattgtattgcattttaagttaagaaaataaa 51392474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 2112661 - 2112582
Alignment:
Q  127 ttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||| |||||| || | |||||| |||| |||||  |||||| ||| ||| |||||||| |||||||||||||||||||||    
T  2112661 ttagtatgttgccttgctttttaaattatttgtgt--cgcgtgcttaatttattgtattgcattttaagttaagaaaataaa 2112582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 55408336 - 55408373
Alignment:
Q  171 ttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  55408336 ttagattgttgtattgcattttaagttaagaaaataaa 55408373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 10569390 - 10569572
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  10569390 catcacgtattacaagcagatctagtgaagcacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgt 10569489  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||||||||||||  || ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  10569490 gtgttgtatgcttagtttgttgtcttgcattttaagttatttgtgtgccgtgtgcttagtttgttgtattgaattttaagtta 10569572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 4577446 - 4577253
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||    
T  4577446 catcacgaattgcaagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtaattgaagatgatttgtatcgtactaaataaattacttgt 4577347  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||| || |||||||||||||    
T  4577346 gtgttttatgcttagtttgttgtattgcattttaagttatttgtgtgccgcgtgcttagtttgttgtacttgaatttgaaattaagaaaataaa 4577253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 25032796 - 25032603
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  25032796 catcacgaattgcaagcaaatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgt 25032697  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    |||||||||||||||||| ||| ||| ||||||||||||| | |||| |||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  25032696 gtgttgtatgcttagttttttgtattgcattttaagttatttatgtgtcgcgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 25032603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 34710306 - 34710123
Alignment:
Q  24 attgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgta 123  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||| |||||||||||||||||||||||     
T  34710306 attgtaagcagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtattaaataaattacttgtgtgttgtg 34710207  T
Q  124 tgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||| ||||||||  || ||||||||  ||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  34710206 tgctt-gtttgttgtcttgcattttaaactatttgtgtgtcgcgtgcttagtttgttgtattgcattttaagttaagaaaataaa 34710123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 30647734 - 30647924
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  30647734 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgt 30647833  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||| ||||| |||||||   || ||||||||| ||| ||||||| | ||| ||||||| |||||||| || ||||||| ||||||||||    
T  30647834 gtgttgtgtgctt-gtttgttatcttgcattttaagctatttgtgtgctgtgtgcttagtttattgtattgcatcttaagtt-agaaaataaa 30647924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 27406663 - 27406853
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||| | |||||||||||||||| |||||||||| |||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||||||    
T  27406663 catcacgaatcgcaagcagatctagtgaaacacatatggataaagtttggaatgt-tctcgattgaagatgatttgtatcgtactaaataaattacttgt 27406761  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| ||||||  ||||  |||||||||||||||| |||||||||||||||||||||    
T  27406762 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcgtacttagtttgttgtattgcattttaagttaagaaaataaa 27406853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 27942946 - 27942770
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  27942946 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 27942847  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  27942846 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 27942770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 40889350 - 40889174
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||| ||||| ||||| ||||||||||||    
T  40889350 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacaattgaagatgatttgtatcgaactaagtaaattacttgt 40889251  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| |||||  |||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  40889250 gtgttgtgtgctt-ctttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 40889174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 31013476 - 31013658
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||| ||||    
T  31013476 catcacgaattgcaagcagatctagtgaagcacatatggacaaaatttggaatgtttcatgattgaagatgatttgtattgtactaaataaattatttgt 31013575  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    |       ||||| ||||||||  || ||||||||| ||| ||||||  | ||| |||||||||||||||| |||||||||||||||||||    
T  31013576 g-------tgctt-gtttgttgtcttgcattttaagctatttgtgtgttgtgtgcttagtttgttgtattgcattttaagttaagaaaata 31013658  T

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Target: chr5; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 32976186 - 32976369
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  32976186 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 32976285  T
Q  116 gtgttgtatgct------tagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| || |      | ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  32976286 gtgttgtgtgttgtgtgcttgtttgttgtcttgcattttaagctatttgtgtgacccgttcttagtttgttgtattgcatttta 32976369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 198
Target Start/End: Original strand, 29618671 - 29618794
Alignment:
Q  75 tgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttag 174  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||  || | ||||||||||| |||||| ||||||||||     
T  29618671 tgattgaagatgatttgtatcgtactaaataaattacttgtgtcttgtatgcttagtttgttgtcttccgttttaagttatttgtgtgtcgcgtgtttaa 29618770  T
Q  175 tttgttgtattgaattttaagtta 198  Q
    |||||||| ||| |||||||||||    
T  29618771 tttgttgtcttgcattttaagtta 29618794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 13479508 - 13479600
Alignment:
Q  106 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||| | ||||||||||||||||||| ||| |||||||||||    
T  13479508 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgcgtcgcgtgtttagtttgttgtcttgcattttaagtta 13479600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 61 - 193
Target Start/End: Original strand, 23648845 - 23648976
Alignment:
Q  61 tttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtg 160  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||  || ||||||||| ||| ||||    
T  23648845 tttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtg 23648943  T
Q  161 tgccgcgtgtttagtttgttgtattgaatttta 193  Q
    || | | |  |||||||||||||||| ||||||    
T  23648944 tgacccttacttagtttgttgtattgcatttta 23648976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 61 - 193
Target Start/End: Complemental strand, 23809727 - 23809596
Alignment:
Q  61 tttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtg 160  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||  || ||||||||| ||| ||||    
T  23809727 tttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtg 23809629  T
Q  161 tgccgcgtgtttagtttgttgtattgaatttta 193  Q
    || | | |  |||||||||||||||| ||||||    
T  23809628 tgacccttacttagtttgttgtattgcatttta 23809596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 39238796 - 39238706
Alignment:
Q  108 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||||||||||||||||||||  || |||||||| |||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  39238796 ttacttgtgtgttgtatgcttagtttgttgtcttccattttaaattatttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 39238706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 3455111 - 3455025
Alignment:
Q  112 ttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||||||||||||||||  || ||||||||||||| ||||||  |||||||||||||||||| ||| |||||||||||    
T  3455111 ttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgtgttgcgtgtttagtttgttgtcttgcattttaagtta 3455025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 10569542 - 10569626
Alignment:
Q  124 tgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||||||| |||  |||||||||||| |||||| |||||| |||||| ||||||||| |||||||||||||||||||||    
T  10569542 tgcttagtttgttgtattgaattttaagttatttgtgtgtcgcgtgcttagttcgttgtattgcattttaagttaagaaaataaa 10569626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 177379 - 177317
Alignment:
Q  146 tttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||| |||||| ||||||||| |||| |||||||| |||||||||||||||||||||    
T  177379 tttaagttatttgtgtgtcgcgtgtttggtttattgtattgcattttaagttaagaaaataaa 177317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 41263677 - 41263611
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||||||||||||| |||||| |||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  41263677 cattttaagttatttgtgtgtcgcgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 41263611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 14279155 - 14279090
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||| |||||||  ||||||  ||||| || ||||||||||||| |||||||||||||||||||||    
T  14279155 cattataagttacttgtgtgttgcgtgcttggtttgttgtattgcattttaagttaagaaaataaa 14279090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 34918203 - 34918281
Alignment:
Q  129 agtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||  || ||||||||||||| |||||| | | || ||| ||| |||||||| |||||||||||||||||||||    
T  34918203 agtttgttgtcttgcattttaagttatttgtgtgtc-catgcttaatttattgtattgcattttaagttaagaaaataaa 34918281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 5146341 - 5146533
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||    
T  5146341 catcacgaattgcaagcagatctagtgaagcacgtatgaacaaagtttggaatgtatcgtgattgaagatgatttgtatcatactaaataaattatttgt 5146440  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||||||||||||||||||  || ||||||||||||| |||||| |||||| |||||||||||||||| |||||||||| ||||||||||    
T  5146441 gtgttgtatgcttagtttgttgtcttgcattttaagttatttgtgtgtcgcgtgcttagtttgttgtattgtattttaagttgagaaaataaa 5146533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 12855470 - 12855281
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  12855470 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgt 12855371  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  12855370 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 12855281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 8852508 - 8852319
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |    
T  8852508 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttat 8852409  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  8852408 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 8852319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 36855403 - 36855596
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||| ||||| |||| |||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  36855403 catcacgaattgcaagcaaatctattgaaacacatatgaacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgt 36855502  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||| |||||||||||||| ||| ||| ||||||||||||| |||||| |||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  36855503 gtgctgtatgcttagttttttgtattgcattttaagttatttgtgtgtcgcgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 36855596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 31192631 - 31192805
Alignment:
Q  18 tcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgt 117  Q
    ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31192631 tcacgaactgcaagtagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattatttgtgt 31192730  T
Q  118 gttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||                ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31192731 gttgt----------------atttcattttaagttatttgtgtgccgcgtgtttagtttgttgtattgcattttaagttaagaaaataaa 31192805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 2780418 - 2780556
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  2780418 catcacgaattgcaagtagatctagtgaaacacatatggacaaagtttgaaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgt 2780517  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagtta 154  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  2780518 gtgttgtatgcttagtttgttgtattgcattttaagtta 2780556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 7588119 - 7588295
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||    
T  7588119 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgt 7588218  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  7588219 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 7588295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 22351230 - 22351406
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||    
T  22351230 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgt 22351329  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  22351330 gtgttgtgtgctt-gtttgttgtcttacattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 22351406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 30822199 - 30822375
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  30822199 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 30822298  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  30822299 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 30822375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 85 - 208
Target Start/End: Original strand, 31173885 - 31174008
Alignment:
Q  85 tgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtat 184  Q
    |||||||||||||| ||||||||||| |||||| ||||||||||| ||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||||    
T  31173885 tgatttctatcgtattaaataaattatttgtgtattgtatgcttaatttgttgtattgcattttaagttatttgtgtgccgcgtgcttagtttgttgtat 31173984  T
Q  185 tgaattttaagttaagaaaataaa 208  Q
    || ||||||||||| |||||||||    
T  31173985 tgcattttaagttatgaaaataaa 31174008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 6363378 - 6363272
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||| |||||||||| |||||||||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  6363378 catcacgaattgcaagcagatctagtgaagcgcatatggacagagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgt 6363279  T
Q  116 gtgttgt 122  Q
    |||||||    
T  6363278 gtgttgt 6363272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 39433612 - 39433716
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||| |||| || |||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  39433612 catcacgaattgcaaggagatataatgaaacacatatggacaaagtttgaaatgtatcgtgattgaagatgatttgtatcgtattaaataaattacttgt 39433711  T
Q  116 gtgtt 120  Q
    |||||    
T  39433712 gtgtt 39433716  T

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Target: chr2; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 39433732 - 39433835
Alignment:
Q  106 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaa 204  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||| ||||||||||||| ||| ||||||| |||||||||    
T  39433732 aattacttgtgtgttgtatgcttagtttgttgtattgcattttaagttatttgtgtgtcgcgtgcttagtttgttgtatttgcattttaaattaagaaaa 39433831  T
Q  205 taaa 208  Q
    ||||    
T  39433832 taaa 39433835  T

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Target: chr2; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 926876 - 926970
Alignment:
Q  103 ataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtt 197  Q
    ||||||||||||||||||||||||||||||||||| | | ||||||||||||| ||||| ||| ||| |||||||||||||||| ||||||||||    
T  926876 ataaattacttgtgtgttgtatgcttagtttgttgtaatgcattttaagttatttgtgttccgtgtgattagtttgttgtattgcattttaagtt 926970  T

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Target: chr2; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 7763203 - 7763298
Alignment:
Q  109 tacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaa 204  Q
    |||||||||||||||||||||||||||||  || |||||||| |||| |||||| ||||||||||||||||||| ||| ||||||| |||||||||    
T  7763203 tacttgtgtgttgtatgcttagtttgttgtcttgcattttaacttatatgtgtgtcgcgtgtttagtttgttgtcttgcattttaatttaagaaaa 7763298  T

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Target: chr2; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 1987461 - 1987368
Alignment:
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    |||||||||||||||||| ||| ||| |||||| |||||| ||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  1987461 gtgttgtatgcttagttttttgtattgcattttgagttatttgtgtgccgcgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 1987368  T

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Target: chr2; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 16218581 - 16218673
Alignment:
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||| ||||||||||||||  || ||||||||||||| |||||| |||||| ||| ||| |||||||| |||||||||||||||||||||    
T  16218581 gtgttgtgtgcttagtttgttgtcttgcattttaagttatttgtgtgtcgcgtgcttaatttattgtattgcattttaagttaagaaaataaa 16218673  T

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Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 38902031 - 38901966
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||| |||| |||||| |||||| ||||||| ||||||||||||||||||||||||||||||    
T  38902031 cattttaaattatttgtgtgtcgcgtgcttagtttattgtattgaattttaagttaagaaaataaa 38901966  T

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Target: chr2; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 43495123 - 43495188
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||||||||| |||| | |||||| |||||||||||||||| |||||||||||||||||||||    
T  43495123 cattttaagttatttgtgcgtcgcgtgcttagtttgttgtattgcattttaagttaagaaaataaa 43495188  T

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Target: chr2; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 6333113 - 6333192
Alignment:
Q  129 agtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||  || ||||||||||||| |||||| |||||| ||||||| || ||||| |||||||||||||||||||||    
T  6333113 agtttgttgtcttgcattttaagttatttgtgtgtcgcgtgcttagtttattttattgcattttaagttaagaaaataaa 6333192  T

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Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 40881345 - 40881429
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaat 104  Q
    |||||||||||  ||| |||||||||||||||||  |||||||||||| ||||||||     ||||||||||||| |||||||||||||    
T  40881345 catcacgaattacaagtagatctagtgaagcacacgtggacaaagtttagaatgtat----tttgaagatgatttgtatcgtactaaat 40881429  T

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Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 4296490 - 4296583
Alignment:
Q  112 ttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||||||| ||||| || |||||  || ||||||||| ||| ||||||  ||||| |||||||||| ||||| |||||||||||||||||||    
T  4296490 ttgtgtgttgtgtgctt-gtctgttgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttatattgcattttaagttaagaaaata 4296583  T

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Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 37245818 - 37245752
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||||||||||||| ||||||||| ||| ||||||||||||| ||| ||||||| |||||||||||||    
T  37245818 cattttaagttatttgtgtgccgtgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 37245752  T

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Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 44280349 - 44280258
Alignment:
Q  101 aaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    |||||||||||||||||||||| ||||| ||||||||  || ||||||||| ||| |||||| | | |  |||||||||||||||| ||||||    
T  44280349 aaataaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccttacttagtttgttgtattgtatttta 44280258  T

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Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 6363254 - 6363203
Alignment:
Q  157 tgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||| |||||| ||||||| |||||||| |||||||||||||||||||||    
T  6363254 tgtgtgtcgcgtgcttagtttcttgtattgcattttaagttaagaaaataaa 6363203  T

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Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 2780529 - 2780566
Alignment:
Q  171 ttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||||||||| |||||||||||||||||||||    
T  2780529 ttagtttgttgtattgcattttaagttaagaaaataaa 2780566  T

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Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 17680882 - 17681073
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  17680882 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgt 17680981  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  17680982 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgtcgcgtgcttagtttgttgtattgcattttaagttaagaaaataaa 17681073  T

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Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 31468578 - 31468389
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  31468578 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgt 31468479  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  31468478 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 31468389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 33164884 - 33164702
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||| ||||||||||||||||||||||||    
T  33164884 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtacagtggttgaagatgatttgtatcgtactaaataaattacttgt 33164785  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||||||||||||  || ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  33164784 gtgttgtatgcttagtttgttgtcttgcattttaagttatttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 33164702  T

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Target: chr1; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 10266578 - 10266769
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| ||||||||||||||||||||||||    
T  10266578 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagattatttgtatcgtactaaataaattacttgt 10266677  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||| || || ||||||||  || ||||||||| ||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  10266678 gtgttgtgtg-tttgtttgttgtcttgcattttaagctatttgtgtgacgcgtgcttagtttgttgtattgcattttaagttaagaaaataaa 10266769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 36230954 - 36230765
Alignment:
Q  18 tcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgt 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||| |||    
T  36230954 tcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagatgatttatatcgtactaaataaattacttatgt 36230855  T
Q  118 gttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||| ||||| ||||||||  || ||||||||| ||| ||| || |||||| |||||||||||||||| |||||||||||||||||||||    
T  36230854 gttgtgtgctt-gtttgttgtcttgcattttaagctatttgtatgtcgcgtgcttagtttgttgtattgcattttaagttaagaaaataaa 36230765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 47300118 - 47300309
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  47300118 catcacgaattgcaagcagatctagtgaagcacatatgaacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgt 47300217  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||| ||||| |||||||   || ||||||||| ||| |||||| |||||| |||||||||||||||| |||||||||||| ||||||||    
T  47300218 gtgttgtgtgctt-gtttgttatcttgcattttaagctatttgtgtgtcgcgtgcttagtttgttgtattgcattttaagttaaaaaaataaa 47300309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 17783815 - 17783622
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  17783815 catcacgaattgcaagcaaatctagtgaaacacatatggacaaaatttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgt 17783716  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaataaa 208  Q
    ||| || |||||||||||  || ||| ||||||||||||| ||||||||| ||| ||||||||||||| ||| ||||||| |||||||||||||    
T  17783715 gtgctggatgcttagttttctgtattgcattttaagttatttgtgtgccgtgtgcttagtttgttgtacttgcattttaaattaagaaaataaa 17783622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 45455773 - 45455964
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |  ||||||||||| |||| ||||||||||||||||||||||||    
T  45455773 catcacgaattgcaagcagatctagtgaaccacatatggacaaagtttggaatgttttgtgattgaagattatttgtatcgtactaaataaattacttgt 45455872  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||| | ||||| ||||||||  || ||||||||||||| |||||| |||||| |||||||||| ||||| |||||||||||||||||||||    
T  45455873 gtgttatgtgctt-gtttgttgtcttgcattttaagttatttgtgtgtcgcgtgcttagtttgttctattgcattttaagttaagaaaataaa 45455964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 2477945 - 2478121
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  2477945 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 2478044  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  2478045 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 2478121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 45239591 - 45239415
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  45239591 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 45239492  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  45239491 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 45239415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 48387724 - 48387900
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  48387724 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgt 48387823  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||||||    
T  48387824 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcatttta 48387900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 48404781 - 48404605
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| |||    
T  48404781 catcacgaattgcaaacagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacctgt 48404682  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaatttta 193  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| ||||||   ||| ||||||||||||||||| ||||||    
T  48404681 gtgttgtgtgctt-gtttgttgtgttgcattttaagctatttgtgtgatccgtatttagtttgttgtattgcatttta 48404605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 8468770 - 8468579
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    ||||| |||||| ||||| || | ||||||| ||||| || |||||||||||||| || |||||||||||||||| |||||| |||||||||| ||||||    
T  8468770 catcatgaattgcaagcatattttgtgaagctcatattgataaagtttggaatgtttcgtgattgaagatgatttgtatcgtgctaaataaatgacttgt 8468671  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| || ||| |||||||||||||||| |||||||||||||||||||||    
T  8468670 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgtcgtgtgcttagtttgttgtattgcattttaagttaagaaaataaa 8468579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 51520645 - 51520456
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||| ||| |||||||||||| |||||||    
T  51520645 catcacgaattgcaagcagatctagtgaagcacatatggacaaagtttgggatgtttcgtgattgaagatgatttgtatggtactaaataaactacttgt 51520546  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||   | |  ||| | ||||||  || ||||||||| ||| |||||| |||||| ||||||| ||| |||| |||||||||||||||||||||    
T  51520545 gttaagca--ctt-ggttgttgtcttgcattttaagctatttgtgtgtcgcgtgcttagtttcttgcattgcattttaagttaagaaaataaa 51520456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 43739362 - 43739233
Alignment:
Q  78 ttgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagttt 177  Q
    ||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||  || ||||||||| ||| |||||| ||||||||||||||    
T  43739362 ttgaagatgatttgtatcatactaaataaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgtcgcgtgtttagttt 43739264  T
Q  178 gttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||||| |||||||||||||||||||||    
T  43739263 gttgtattgcattttaagttaagaaaataaa 43739233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 44929007 - 44929108
Alignment:
Q  108 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgta-ttgaattttaagttaagaaaata 206  Q
    ||||||||||| |||||||||||||| ||  ||| ||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||| |||||||||||    
T  44929007 ttacttgtgtgatgtatgcttagttttttttattgcattttaagttatttgtgtgccgcgtgcttagtttgttgtacttgcattttaaattaagaaaata 44929106  T
Q  207 aa 208  Q
    ||    
T  44929107 aa 44929108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 23093143 - 23093024
Alignment:
Q  92 tatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaat-- 189  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||      
T  23093143 tatcgtactaaataaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcattt 23093045  T
Q  190 --tttaagttaagaaaataaa 208  Q
      |||||||||||||||||||    
T  23093044 tatttaagttaagaaaataaa 23093024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 45363052 - 45362957
Alignment:
Q  109 tacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaa 204  Q
    |||||||||||||||||| ||||||||||  || |||||||| |||| |||||| || |||||||||||||||| ||| ||||||| |||||||||    
T  45363052 tacttgtgtgttgtatgcatagtttgttgtcttgcattttaacttatatgtgtgtcgtgtgtttagtttgttgtcttgcattttaatttaagaaaa 45362957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 37646304 - 37646367
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||||||||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  37646304 cattttaagttatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 37646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 37822887 - 37822822
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||||||| ||| |||||| |||||| |||||||||||||||| |||||||||||| ||||||||    
T  37822887 cattttaagctatttgtgtgtcgcgtgcttagtttgttgtattgcattttaagttaataaaataaa 37822822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 40500736 - 40500655
Alignment:
Q  127 ttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    ||||| |||||| || |||||||| |||| |||||| |||||| ||||||| |||||||| ||||||| |||||||||||||    
T  40500736 ttagtatgttgccttgcattttaaattatttgtgtgtcgcgtgcttagtttattgtattgtattttaaattaagaaaataaa 40500655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 27630207 - 27630270
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  27630207 cattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 27630270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 29524035 - 29523980
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||    
T  29524035 cattttaagttatttgtgtgtcgcgtgtttagtttgttgtcttgcattttaagtta 29523980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 37420091 - 37420154
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaata 206  Q
    ||||||||| ||| ||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  37420091 cattttaagctatttgtgtgttgcgtgcttagtttgttgtattgcattttaagttaagaaaata 37420154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 38212620 - 38212565
Alignment:
Q  143 cattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||||||||| |||||| |||||| ||||||| |||||||| |||||||||||    
T  38212620 cattttaagttatttgtgtgtcgcgtggttagtttattgtattgcattttaagtta 38212565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 30165 - 30347
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||          |||||||||||    
T  30165 catcacgaattgcaagcagatctagtgaagcacatctggacaaagtttggaatgtatcgtgattgaagatgatttccat----------aaattacttgt 30254  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagttaagaaaataaa 208  Q
    |||||||||||||||||||||| | | ||||||||||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  30255 gtgttgtatgcttagtttgttgtaatgcattttaagttatttgtgtgccgcgtgcttaatttgttgtattgcattttaagttaagaaaataaa 30347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 170147 - 170329
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    ||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| ||||||||||| ||| ||||||||    
T  170147 catcatgaattgcaagcagatctagtgaagcacatatggtcaaagtttggaatgtttcacgattgaagatgatttgtatcgtactaattaagttacttgt 170246  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaattttaagtta 198  Q
    ||||||| ||||||||||||||  || |||| |||||||| ||||||||||||| ||||||| || ||||| |||||||||||    
T  170247 gtgttgtgtgcttagtttgttgtcttgcattctaagttatttgtgtgccgcgtgcttagtttattatattgcattttaagtta 170329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 4941 - 5136
Alignment:
Q  16 catcacgaattgaaagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgt 115  Q
    |||||||||||| ||||||||||||||||| || ||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  4941 catcacgaattgcaagcagatctagtgaaggacctatggacaaagtttggaatgtttcgtgattgaagatgatttatatcgtactaaataaattacttgt 5040  T
Q  116 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagtttgttgtattgaat----tttaagttaagaaaataaa 208  Q
    ||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||||||||||||| ||    |||||||||||||||||||    
T  5041 gtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagtttgttgtattgcattttatttaagttaagaaaataaa 5136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 56811 - 56946
Alignment:
Q  76 gattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgtttagt 175  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||  || ||||||||| ||| |||||| | |||  |||||    
T  56811 gattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgacccgtacttagt 56909  T
Q  176 ttgttgtattgaat----tttaagttaagaaaataaa 208  Q
    ||||||||||| ||    |||||||||||||||||||    
T  56910 ttgttgtattgcattttatttaagttaagaaaataaa 56946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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