View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_534 (Length: 226)
Name: NF11737A_low_534
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_534 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 42922306 - 42922082
Alignment:
| Q |
1 |
taatgttatgacatacacaccacaattctttggtaagcctgataaaaaacaattgaatcaatgttgtcatgaaattgtgctttcacgtgttgccttacaa |
100 |
Q |
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| T |
42922306 |
taatgttatgacatacacaccacaattctttggtaagcctgataaaaaacaattgaatcaatgttgtcatgaaattgtgctt-cacgtgttgccttacaa |
42922208 |
T |
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| Q |
101 |
acataacaacgatgattgtaactgggttcgtaacaatagccgtacaggtgcactctaaacctgcatcttcagtcccatgttttcaaaggtcaagcacatt |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42922207 |
acataacaacgatgattgtaactgggtttgtaacaatagccgtacaggtgcactctaaacctgcatcttcactcccatgttttcaaaggtcaagcacatt |
42922108 |
T |
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| Q |
201 |
tttataacatcatattacaactgatg |
226 |
Q |
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||||| |||||||||||||||||||| |
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| T |
42922107 |
tttatgacatcatattacaactgatg |
42922082 |
T |
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