View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_540 (Length: 226)
Name: NF11737A_low_540
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_540 |
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| [»] chr8 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 34584545 - 34584732
Alignment:
| Q |
33 |
ggataagtggactgtacaagaaaacaggacttaaaaagagggattcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttt |
132 |
Q |
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| T |
34584545 |
ggataagtggactgttcaagaaaacaggacttaaaaag------tcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttt |
34584638 |
T |
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| Q |
133 |
tgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctattcagttgaagtgtgtttactcatacttgc |
226 |
Q |
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| T |
34584639 |
tgtatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttttattcagttgaagagtgtttactcatacttgc |
34584732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 34586015 - 34586170
Alignment:
| Q |
65 |
aaaaagagggattcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttttgaatatgttgtcaagagtcccttgaa----t |
160 |
Q |
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| T |
34586015 |
aaaaagagggattcaaagtctgttatattttagttatataa-----------tttttactcttgcttttgtatatgttgt-tagagtccctgaaatcttt |
34586102 |
T |
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| Q |
161 |
cttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtttactcatacttgc |
226 |
Q |
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| T |
34586103 |
cttttcttcaatagattgttttgaaattatcttttatgatcaggtgaagtgtgtttactcatacttgc |
34586170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 34583099 - 34583071
Alignment:
| Q |
1 |
ggtcgccatggcaaaaattgagttaaaaa |
29 |
Q |
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| T |
34583099 |
ggtcgccatggcaaaaattgagttaaaaa |
34583071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 19179735 - 19179845
Alignment:
| Q |
116 |
atttttactcttgcttttgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtt |
213 |
Q |
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| T |
19179735 |
atttttactcttgcttttgtatatgttgtca-gagtcccttgaatcttttcttaaatagattgttttgaaattgtcttttatgagcagttg-agtgtgtt |
19179832 |
T |
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| Q |
214 |
tactcatacttgc |
226 |
Q |
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| T |
19179833 |
tactcatacttgc |
19179845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 1478115 - 1478225
Alignment:
| Q |
116 |
atttttactcttgcttttgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtt |
213 |
Q |
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| T |
1478115 |
attttaactcttgcttttgtatatgttgtca-gagtcccttgaatcttttcttaaatagattgttttgaaattgtcttttatgagcagttg-agtgtgtt |
1478212 |
T |
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| Q |
214 |
tactcatacttgc |
226 |
Q |
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| T |
1478213 |
tactcatacttgc |
1478225 |
T |
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