View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_541 (Length: 226)
Name: NF11737A_low_541
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_541 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 2262170 - 2262385
Alignment:
| Q |
11 |
agatggacatctactagctaagtcgtcatttttgtaaaagaggttgaaggtagggagcaaatgcagagagttaggactttacagggatcacaaacaaaag |
110 |
Q |
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| T |
2262170 |
agatggacatctactagctaagtcgtcatttttgtaaaagaggttgaaggtagggagcaaatgcagagatttaggactttacagggatcacaaacaaaag |
2262269 |
T |
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| Q |
111 |
attttaacgttgattaaagggaaaaccagtagccttctacaatattacctgaaaaagctactcatcaccacatgtaagtcacatgtctacatgtacatat |
210 |
Q |
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| T |
2262270 |
attttaacgttgattaaagggaaaaccagtagccttttacaatattacctgaaaaagctactcatcaccacatgtaagtcacatgtctacatgtacatat |
2262369 |
T |
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| Q |
211 |
tgcatatccaagcagt |
226 |
Q |
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| T |
2262370 |
tgcatatccaagcagt |
2262385 |
T |
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