View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_546 (Length: 224)
Name: NF11737A_low_546
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_546 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 39 - 224
Target Start/End: Original strand, 30336271 - 30336456
Alignment:
| Q |
39 |
ctgcatttacatgtcttgctatggccataatgtatttacaattgaagtagaactaggaagtatataatatctaatgcactggggaatttatttttgtttt |
138 |
Q |
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| T |
30336271 |
ctgcatttacatgtcttgctatggccataatgtatttacaattgaagtagaactaggaagtatataatatctaatgcactggggaatttctttttgtttt |
30336370 |
T |
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| Q |
139 |
cttcttttgcagcggaaaagagggagggttgaatcaagatggagattatattttatccaatccatatcatctggtattgcatcttt |
224 |
Q |
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| T |
30336371 |
cttcttttgcagcggaaaagagggagggttgaatcaagatggagattatattttatccaatccatatcatctggtattgcatcttt |
30336456 |
T |
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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 33020411 - 33020235
Alignment:
| Q |
40 |
tgcatttacatgtcttgct---atggccataatgtatttacaattgaagtagaactaggaagtatataatatctaatgcactggggaatttatttttgtt |
136 |
Q |
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||||||||||||| ||||| || | |||||| |||| ||||||||||||| | |||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
33020411 |
tgcatttacatgttttgctccgatagtcataatctattgacaattgaagtagtaataggaagtatataatatctaatatactggggaatttctttttgtt |
33020312 |
T |
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| Q |
137 |
ttcttcttttgcagcggaaaagagggagggttgaatcaagatggagattatattttatccaatccatatcatctggtattgcatcttt |
224 |
Q |
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| T |
33020311 |
t--tttttttgtagtggaaaa-agggagtgtt--------atggagattatattttatcaaatttgcatcatctggtattgcatcttt |
33020235 |
T |
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