View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_547 (Length: 224)
Name: NF11737A_low_547
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_547 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 32853672 - 32853896
Alignment:
| Q |
1 |
aaaaattaattccctttattctttcatcatcttctttcttcttatgccaacaatctctacttgaatggttgggaattttgcatctagtacatctaaagcg |
100 |
Q |
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| T |
32853672 |
aaaaattaattccctttattctttcatcatcttctttcttcttatgccaacaatctctacttgaatggttgggaattttgcatctagtacatctaaagcg |
32853771 |
T |
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| Q |
101 |
acaatcttttgattcatgtccagattttttgc-aaataaagcaataagaattagaattacctcgtatcctttctcctcctcttcctttgtatccataatg |
199 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853772 |
acaatcttttgattcatgtccagattttttgcaaaataaagcaataagaattagaattacctcgtatcctttctcctcctcttcctttgtatccataatg |
32853871 |
T |
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| Q |
200 |
ccttccatgacctctgttggaagga |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
32853872 |
ccttccatgacctctgttggaagga |
32853896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37176808 - 37177031
Alignment:
| Q |
1 |
aaaaattaattccctttattctttcatcatcttctttcttcttatgccaacaatctctacttgaatggttgggaattttgcatctagtacatctaaagcg |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176808 |
aaaaattaattccctttattctttcatcattttctttcttcttatgccaacaatctctacttgaatggttgggaattttgcatctagtacatctaaagcg |
37176907 |
T |
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| Q |
101 |
acaatcttttgattcatgtccagattttttgcaaataaagcaataagaattagaattacctcgtatcctttctcctcctcttcctttgtatccataatgc |
200 |
Q |
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| T |
37176908 |
acaatcttttgattcatgtccagattttttgcaaataaagcaataagaattagaattacctcgtatcctttctcctcctcttcctttgtatccataatgc |
37177007 |
T |
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| Q |
201 |
cttccatgacctctgttggaagga |
224 |
Q |
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| T |
37177008 |
cttccatgacctatgttggaagga |
37177031 |
T |
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