View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_55 (Length: 425)
Name: NF11737A_low_55
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 325
Target Start/End: Original strand, 29475168 - 29475482
Alignment:
| Q |
5 |
gtacaatgagatggacatcaaaacgagaaagctcgagtaagttttgagttgaacatggcgagtggtacgtgaagactgttttgcaaacaatatggtggtg |
104 |
Q |
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| T |
29475168 |
gtacactgagatgatcatcaaaacgagaaagctcgagtaagttttgagttgaacatggcgagtggtacgtgaagactgttttgcaaacaatatggtggtg |
29475267 |
T |
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| Q |
105 |
aagatagctaaggacaacaccccataaagaaagaactggaaagctttccatcttctaattaatcgattgaaagaagggctcagagcataacaaaccagac |
204 |
Q |
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| T |
29475268 |
aagatagctaaggacaacaccccataaagaaagatctggaaagctttcaattttccaattaatcgattgaaagaagggctcagagcataacaaaccagac |
29475367 |
T |
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| Q |
205 |
caactatacttgatataaggccaactagtctccatgtcgtccatacatgaaaaacttcaggaaccgcatgtgaaacctgcaaggtaacaagaactggtaa |
304 |
Q |
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| T |
29475368 |
cgactatacttgacataaggccaactactctccatg------atagattaaaaacttcaggatccgcaagtcgaacctgcaaggtaaaaagaactgttaa |
29475461 |
T |
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| Q |
305 |
ttttagtaaggtttagaattt |
325 |
Q |
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||||||||||||||||||||| |
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| T |
29475462 |
ttttagtaaggtttagaattt |
29475482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 73 - 238
Target Start/End: Original strand, 29528912 - 29529077
Alignment:
| Q |
73 |
gtgaagactgttttgcaaacaatatggtggtgaagatagctaaggacaacaccccataaagaaagaactggaaagctttccatcttctaattaatcgatt |
172 |
Q |
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| T |
29528912 |
gtgatgactgctttgcaaacaatacggtggtaaagatgactaaagatgacactccatagagaaagaacttgaaaggtttccaccttccaattaatcgatt |
29529011 |
T |
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| Q |
173 |
gaaagaagggctcagagcataacaaaccagaccaactatacttgatataaggccaactagtctcca |
238 |
Q |
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| T |
29529012 |
gaaagaagggctcagagcataacataacaggccaactacacttgacataagcccaactactctcca |
29529077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 29612550 - 29612391
Alignment:
| Q |
79 |
actgttttgcaaacaatatggtggtgaagatagctaaggacaacaccccataaagaaagaactggaaagctttccatcttctaattaatcgattgaaaga |
178 |
Q |
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|||| ||| |||||||||||||||| |||||||| ||||| ||||| ||||| ||| |||||| || | |||||||||| |||||| ||||||||||| |
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| T |
29612550 |
actgctttacaaacaatatggtggtaaagatagccaaggaaaacactccatacagagagaacttgacaatgttccatcttccaattaaacgattgaaaga |
29612451 |
T |
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| Q |
179 |
agggctcagagcataacaaaccagaccaactatacttgatataaggccaactagtctcca |
238 |
Q |
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| T |
29612450 |
agggctctgagcataacacaataggccaaatacacttgacacaaggccaactagtctcca |
29612391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 28183730 - 28183531
Alignment:
| Q |
46 |
ttttgagttgaacatggcgagtggtacgtgaagactgttttgcaaacaatatggtggtgaagatagctaaggacaacaccccataaagaaagaactggaa |
145 |
Q |
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| T |
28183730 |
tttttagttgaacatggcgcgtggaaggtgatgcctgctttacaactaatatggtggttaagatggctaaggacaacgctacatagagaaagaccttgaa |
28183631 |
T |
|
| Q |
146 |
agctttccatcttctaattaatcgattgaaagaagggctcagagcataacaaaccagaccaactatacttgatataaggccaactagtctccatgtcgtc |
245 |
Q |
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| T |
28183630 |
aggattccaccttccaaataatcgattgaaagaagggcttagagcataacataacaagccaacaatacatgacataaaaccaattactctccaagtcgtc |
28183531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 29526915 - 29527032
Alignment:
| Q |
78 |
gactgttttgcaaacaatatggtggtgaagatagctaaggacaacaccccataaagaaagaactggaaagctttccatcttctaattaatcgattgaaag |
177 |
Q |
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| T |
29526915 |
gactgctttgcaaataatatggttgttaagatggctaaggacaacactacatagagaaagaccttgaaaggattccaccttccaaataatcgattgaaag |
29527014 |
T |
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| Q |
178 |
aagggctcagagcataac |
195 |
Q |
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|||||| |||||||||| |
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| T |
29527015 |
aagggcctagagcataac |
29527032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 29524752 - 29524648
Alignment:
| Q |
88 |
caaacaatatggtggtgaagatagctaaggacaacaccccataaagaaagaactggaaagctttccatcttctaattaatcgattgaaagaagggctcag |
187 |
Q |
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||||||| ||||| || |||||| | ||||| ||||||||||| |||||||||| || || |||||| ||| ||| || |||||||||||| ||||| | |
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| T |
29524752 |
caaacaacatggtagtaaagataaccaaggaaaacaccccatacagaaagaacttgagagtgttccattttccaatgaaacgattgaaagaatggctctg |
29524653 |
T |
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| Q |
188 |
agcat |
192 |
Q |
| |
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||||| |
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| T |
29524652 |
agcat |
29524648 |
T |
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