View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_554 (Length: 223)
Name: NF11737A_low_554
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_554 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 7122959 - 7122799
Alignment:
| Q |
53 |
aatgctcctacattgaataatggcttctgatgactacatagtaagagacatactatgtggacagatacgggtcaaacaattgaacattatactgtgttta |
152 |
Q |
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| T |
7122959 |
aatgctcctatattgaataatggcttctgatgactacatagtaagagacatactatgtggacagatacgggtcaaacaattgaacattatactgttttta |
7122860 |
T |
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| Q |
153 |
tataaatgctaataaggtagtcataagtcggaggttatatatttcatacatgtgatgtcca |
213 |
Q |
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| T |
7122859 |
tataaatgctaataaggtagtcataagtcggaggttatatatttcatacatgttatgtcca |
7122799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 7122967 - 7123005
Alignment:
| Q |
22 |
gatacagccaaatttagaaggatccatccaaaatgctcc |
60 |
Q |
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| T |
7122967 |
gatacagccaaatttagaaggatccatccaaaatgctcc |
7123005 |
T |
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