View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_556 (Length: 222)
Name: NF11737A_low_556
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_556 |
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| [»] scaffold0212 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0212 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 13845 - 14027
Alignment:
| Q |
40 |
acatcagcagatgttacaataatacgtagatgagttttggctggtacaaccactctattgtccacttctaataaacgtgattgacccaattctagatcat |
139 |
Q |
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| T |
13845 |
acatcagcagatgttacaataatacgtagatgagttttggctggtacaaccactctattgtccacttctaataaacgtgattgacccaattctagatcat |
13944 |
T |
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| Q |
140 |
cttccggaatcgtataactgtcaaaagtgagtgactgttcatcggaactgttatagtctgaatactcataagtccgataccat |
222 |
Q |
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| T |
13945 |
cttccggaatcgtataactgtcaaaagtgagtgactgttcatcggaactgttatagtctgaatactcataagtccgataccat |
14027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 173
Target Start/End: Complemental strand, 1677661 - 1677528
Alignment:
| Q |
40 |
acatcagcagatgttacaataatacgtagatgagttttggctggtacaaccactctattgtccacttctaataaacgtgattgacccaattctagatcat |
139 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||| |||||||| |
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| T |
1677661 |
acatcaacaaatgttacaataatacgtagatgagttttggctggtacaatcactctattgtccaattctaataaacatgattgacctaattatagatcat |
1677562 |
T |
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| Q |
140 |
cttccggaatcgtataactgtcaaaagtgagtga |
173 |
Q |
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| T |
1677561 |
tttccaaaatcgtataagtttcaaaagtgagtga |
1677528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 34584443 - 34584480
Alignment:
| Q |
185 |
aactgttatagtctgaatactcataagtccgataccat |
222 |
Q |
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| T |
34584443 |
aactgttatagtctgaatactcataagtccgataccat |
34584480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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