View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_558 (Length: 222)
Name: NF11737A_low_558
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_558 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 37705459 - 37705272
Alignment:
| Q |
15 |
acatcaatcaagtcacccacttagtcgtaaatataagaaatgtggtccatgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtat |
114 |
Q |
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| T |
37705459 |
acatcaatcaagtcacccacttagtcgtaaatataagaaatgtggtccatgatgaaccaattataaaggtggtctaccgtagaacccacgagttgagtat |
37705360 |
T |
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| Q |
115 |
cgatatccgatgacatctgatactttttctttttatatgctcaatgcattttcttttgtgctgtaacaaactttgaaaaaattataaa |
202 |
Q |
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| T |
37705359 |
cgatatccgatggcatctgatactttttctttttatatgctcaatgcattttcttttgtgctgtaacaaactttgaagaaattataaa |
37705272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 37438116 - 37437974
Alignment:
| Q |
60 |
tccatgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttatatgctcaat |
159 |
Q |
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| T |
37438116 |
tccatgatgaaccgcttataaaggtggtttacagtagaactcaatagtagagtatcgatatcatatgacacttaatactttttctttttatatgctcagt |
37438017 |
T |
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| Q |
160 |
gcattttcttttgtgctgtaacaaactttgaaaaaattataaa |
202 |
Q |
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| T |
37438016 |
gcattttcttatgtgctataataagctttgaggaaattataaa |
37437974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 37700753 - 37700646
Alignment:
| Q |
62 |
catgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttatatgctcaatgc |
161 |
Q |
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| T |
37700753 |
catgatgaaccacttataaaagtggtctacggtagaactcacgagtagagtatcaatatccgatgacacttaatatgttttctttttatgtgctcagtgc |
37700654 |
T |
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| Q |
162 |
attttctt |
169 |
Q |
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|||||||| |
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| T |
37700653 |
attttctt |
37700646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 16840622 - 16840753
Alignment:
| Q |
70 |
accaattataaaggtggtctaccgtagaactcacgagtagagtatcga-tatccgatgacatctgatactttttctttttatatgctcaatgcattttct |
168 |
Q |
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|||| ||||||| ||||| ||| |||||||||||||||||||||| | |||| |||||| | |||||||||||||||||||||| | | |||||||| |
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| T |
16840622 |
accacttataaaagtggtttactttagaactcacgagtagagtatcaaatatcttatgacacttaatactttttctttttatatgcttagtacattttct |
16840721 |
T |
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| Q |
169 |
tttgtgctgtaacaaactttgaaaaaattata |
200 |
Q |
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| T |
16840722 |
tatttgttataacaaactttgaataaattata |
16840753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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