View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_559 (Length: 222)
Name: NF11737A_low_559
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_559 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1483217 - 1482996
Alignment:
| Q |
1 |
tttgatagtagaaaaaactcctacagaagggacattgcttttaacatctaatgaattcgacattacacatcagcaataatcagatcatgcaatatttact |
100 |
Q |
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| T |
1483217 |
tttgatagtagaaaaaactcctacagaagggacattgcttttaacatctaatgaattctacattacacatcagcaataatcagatcatgcaatatttact |
1483118 |
T |
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| Q |
101 |
agtacaagtgaagaagaaattcaacacatacctttaaatgataattcttctgtaaggattgccgaacctgaccagagtatatgtcacacacatcgaccaa |
200 |
Q |
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| T |
1483117 |
agtacaagtgaagaagaaattcaacacatacctttaaatgataattcttctgtaaggattgccgaacctgaccagagtatatgtcacacacatcgaccaa |
1483018 |
T |
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| Q |
201 |
ttaaatataaaccctaaaaaat |
222 |
Q |
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| T |
1483017 |
ttaaatataaaccctaaaaaat |
1482996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 1442902 - 1442737
Alignment:
| Q |
22 |
tacagaagggacattgcttttaacatctaatgaattcgacattacacatcagcaataatcagatcatgcaatatttactagtacaagtgaagaagaaatt |
121 |
Q |
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| T |
1442902 |
tacagaagagacattgattttaacatctaatggattctacattacacatcagcaataatcagaa---gtaacatttactagtacaagtgaagaagaaatt |
1442806 |
T |
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| Q |
122 |
caacacatacctttaaatgataattcttctgtaaggattgccgaacctgaccagagtatatgtcacaca |
190 |
Q |
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| T |
1442805 |
caacacatacctgtaagtgataattcttttgtaagttttgtcgaacctgaccagtgtatatgccacaca |
1442737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 31684 - 31730
Alignment:
| Q |
129 |
tacctttaaatgataattcttctgtaaggattgccgaacctgaccag |
175 |
Q |
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| T |
31684 |
tacctttaagtgatatttcttctgtaaggattgccgaacttgaccag |
31730 |
T |
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