View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_560 (Length: 222)

Name: NF11737A_low_560
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_560
NF11737A_low_560
[»] chr7 (2 HSPs)
chr7 (105-222)||(37372187-37372304)
chr7 (1-86)||(37372290-37372376)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 37372304 - 37372187
Alignment:
Q  105 ttcctaaatctccacttgccactgttaatttgactaccatccatctcatttatttccttaatgcaaaatttataggttttgtatgtacataacattattt 204  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37372304 ttcctaaatctccacttgccactagtaatttgacaaccatccatctcatttatttccttaatgcaaaatttataggtcttgtatgtacataacattattt 37372205  T
Q  205 tggtgcggtcttgagtga 222  Q
    ||||||||||||||||||    
T  37372204 tggtgcggtcttgagtga 37372187  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 37372376 - 37372290
Alignment:
Q  1 attatgtcatatatcacatcattctcgaactcatcaatctctaaaa-ttttataatattttctcttgtagttttcctaaaactccac 86  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||    
T  37372376 attatgtcatatatcacatcactctcgaactcatcaatctctaaaacttttataataatttctcttgtagttttcctaaatctccac 37372290  T

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