View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_568 (Length: 221)
Name: NF11737A_low_568
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_568 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 74 - 221
Target Start/End: Complemental strand, 46604438 - 46604291
Alignment:
| Q |
74 |
aaatctaaactcttgcttactattgtcaaagtatcacaagtaggtgggtgatatgaatactttctttaatactcattttcttattagataaaatttacat |
173 |
Q |
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| T |
46604438 |
aaatctaaactcttgcttactattgtcaaagtatcacaagtaggtgagtgatatgaatactttctttaatactcatttccttattagatgaaatttacat |
46604339 |
T |
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| Q |
174 |
gaattttacactttgtaaatgatttcgtataaagtggtgaaaaccacg |
221 |
Q |
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| T |
46604338 |
gaattttacaatttgtaaatgatttcgtataaagtggtgaaagccacg |
46604291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 46606057 - 46605982
Alignment:
| Q |
7 |
acttcatcacctatcttaagaatttatctgcctcagcctcataagcattagtcctccatgataaagaaaatctaaa |
82 |
Q |
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| T |
46606057 |
acttcatcacctatcttaagaatttatctgcctcagcctcataagcattagtcctccatgataaagaaaatttaaa |
46605982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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