View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_57 (Length: 424)
Name: NF11737A_low_57
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Original strand, 37996068 - 37996461
Alignment:
| Q |
16 |
atcaactcgctgacgaggcactggggatggaacatcaacttgcttacgtggcactggggtcgtttgtggtaaattcagatcagccattggttgaacagga |
115 |
Q |
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| T |
37996068 |
atcaactcgctgacgaggcactggggatggaacatcaacttgcttacgtggcactggggtcgtttgtggtaaattcagatcagccattggttgaacagga |
37996167 |
T |
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| Q |
116 |
gcatcgacgtcattaagattaaacgtcgatgtttcatccttaagtggccataaaagaggggctgtacttgtatctgatgttgaagtaggggttttcttgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37996168 |
gcatcgacgtcattaagattaaacgtcgatgtttcatcgttaagtggccataaaagaggggctgtacttgtatctgatgttgaagtaggggttttcttgt |
37996267 |
T |
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| Q |
216 |
cgggatcggagcaatcattcccgctgagtcgatgattagttgatgacactttggcaatatttctcttcatgacatcaactttctttccaccttctctaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37996268 |
cgggatcggagcaatcattcccgctgagtcgatgattagttgatgacactttggcaatatttctcttcatgacatcaactttctttccaccttctctaag |
37996367 |
T |
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| Q |
316 |
accactcattgcagcatcataagtttccatagctacagcaccttcctcagcatatctgatggcttcccggcacagattggcataccgtgatgtc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37996368 |
accactcattgcagcatcataagtttccatagctacagcaccttcctcagcatatctgatggcttcccggcacagattggcataccgtgatgtc |
37996461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 37996034 - 37996093
Alignment:
| Q |
15 |
catcaactcgctgacgaggcactggggatggaacatcaacttgcttacgtggcactgggg |
74 |
Q |
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| T |
37996034 |
catcaactcgctgacgaggcactgaggatggactatcaactcgctgacgaggcactgggg |
37996093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 37995968 - 37996025
Alignment:
| Q |
15 |
catcaactcgctgacgaggcactggggatggaacatcaacttgcttacgtggcactgg |
72 |
Q |
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||||| ||||||||||||||| |||||||||| |||||||| || |||| |||||||| |
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| T |
37995968 |
catcatctcgctgacgaggcattggggatggaccatcaactcgcctacgaggcactgg |
37996025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 393
Target Start/End: Complemental strand, 35698881 - 35698764
Alignment:
| Q |
276 |
ttctcttcatgacatcaactttctttccaccttctctaagaccactcattgcagcatcataagtttccatagctacagcaccttcctcagcatatctgat |
375 |
Q |
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|||| ||||| ||| |||| |||||| |||||||| ||| |||| |||| ||||||| |||||||||||||| ||| || || || |||||||||||||| |
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| T |
35698881 |
ttcttttcatcacagcaaccttcttttcaccttctttaaaaccagtcatagcagcattataagtttccatagttaccgccccatcttcagcatatctgat |
35698782 |
T |
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| Q |
376 |
ggcttcccggcacagatt |
393 |
Q |
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||||||||| || ||||| |
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| T |
35698781 |
ggcttcccgacatagatt |
35698764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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