View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_578 (Length: 218)
Name: NF11737A_low_578
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_578 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 15066356 - 15066547
Alignment:
| Q |
9 |
gatggacatcaaacaattagcgaagaaaacaaggtaatccatgattataataacctaatcttgtctcttcctagagaaaatggatgtgatactcaatatt |
108 |
Q |
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| T |
15066356 |
gatggacaagaaacaattagcgaagaaaacaaggtaatccatgattataataacctaatcttgtctcttcctagagaaaatggatgtgatactcaatatt |
15066455 |
T |
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| Q |
109 |
tttatttttatcatggattttggtgtccatcaactcttatccaatctgtgaactcttttcaaaataattttcatgccaaagatagtgatatt |
200 |
Q |
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| T |
15066456 |
tttatttttatcatggattttggtgtccatcaactcttatccaatctgtgaactcttttcaaaataattttcatgccaaagatagtgatatt |
15066547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 15215087 - 15214896
Alignment:
| Q |
9 |
gatggacatcaaacaattagcgaagaaaacaaggtaatccatgattataataacctaatcttgtctcttcctagagaaaatggatgtgatactcaatatt |
108 |
Q |
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| T |
15215087 |
gatggacaagaaacaactagcaaagtaaacaaggtaagccatgattataataacctaatcttgtcacttcctagagaaaatgggtgtgagactcaatata |
15214988 |
T |
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| Q |
109 |
tttatttttatcatggattttggtgtccatcaactcttatccaatctgtgaactcttttcaaaataattttcatgccaaagatagtgatatt |
200 |
Q |
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| T |
15214987 |
tgtatttttttcatggattttggtgtccatcaactcttattcaatctgtgaactcttttcaaaataattttcatgctaaagacagtgatatt |
15214896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 32 - 200
Target Start/End: Original strand, 13033048 - 13033216
Alignment:
| Q |
32 |
agaaaacaaggtaatccatgattataataacctaatcttgtctcttcctagagaaaatggatgtgatactcaatatttttatttttatcatggattttgg |
131 |
Q |
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| T |
13033048 |
agaaaacaaggtaatccatgattataataacctaatcttgtcacttcctagagaaaatgggtgtgagactgaatatatgtatttttttcatggattttgg |
13033147 |
T |
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| Q |
132 |
tgtccatcaactcttatccaatctgtgaactcttttcaaaataattttcatgccaaagatagtgatatt |
200 |
Q |
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| T |
13033148 |
tgtccatcatatcttatccaatctgtcaacacttttcaaaataaatttcatgccaaagacaatgatatt |
13033216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 15052151 - 15052345
Alignment:
| Q |
9 |
gatggacatcaaacaattagcgaagaaaacaaggtaatccatgattataataacctaatcttgtctcttcctagagaa---aatggatgtgatactcaat |
105 |
Q |
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| T |
15052151 |
gatggacaagaaaaaattagcgaagaaaacaaggtaatccatgattataataacctaatcttgtctcttcctagagaagatgatgggtctgtaagtcaat |
15052250 |
T |
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| Q |
106 |
atttttatttttatcatggattttggtgtccatcaactcttatccaatctgtgaactcttttcaaaataattttcatgccaaagatagtgatatt |
200 |
Q |
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| T |
15052251 |
atttgtatttttatcatgaattttggtgtccatctacatttatccaatctacgatctcttttcaaaataattttcatgctaaagacagtgatatt |
15052345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 15076309 - 15076391
Alignment:
| Q |
9 |
gatggacatcaaacaattagcgaagaaaacaaggtaatccatgattataataacctaatcttgtctcttcctagagaaaatgg |
91 |
Q |
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| T |
15076309 |
gatggacaagaaacaattagcgaagaaaacaaggtaatccatgattataataacctaatcttgtcacttcctaaagaaaatgg |
15076391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 15047402 - 15047562
Alignment:
| Q |
39 |
aaggtaatccatgattataat-aacctaatcttgtctcttcctagagaaaatggatgtgatactcaatatttttatttttat-catggattttggtgtcc |
136 |
Q |
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| T |
15047402 |
aaggtaagtcatgattataatgaagttaatattgtcacttgctagagaaaatgggtctctaacccaatatttgtattttttttcatggatttctgtgtcc |
15047501 |
T |
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| Q |
137 |
atcaactcttatccaatctgtgaactcttttcaaaataattttcatgccaaagatagtgat |
197 |
Q |
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| T |
15047502 |
atcaactcttatccaatccataaactcttttcaaaattattttaaggccaaagagagtgat |
15047562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 4506999 - 4506906
Alignment:
| Q |
107 |
tttttatttttatcatggattttggtgtccatcaactcttatccaatctgtgaactcttttcaaaataattttcatgccaaagatagtgatatt |
200 |
Q |
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| T |
4506999 |
tttttatttttttcaaggtttttggtgtccatcaaatttaatccaacctataaactcttttcaaaatcattttcaagccaaagacaatgatatt |
4506906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 15169249 - 15169175
Alignment:
| Q |
126 |
ttttggtgtccatcaactcttatccaatctgtgaactcttttcaaaataattttcatgccaaagatagtgatatt |
200 |
Q |
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| T |
15169249 |
ttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagatagtgatatt |
15169175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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