View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_579 (Length: 218)
Name: NF11737A_low_579
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_579 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 56168527 - 56168744
Alignment:
| Q |
1 |
tcagagggagattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctgatgtggct |
100 |
Q |
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| T |
56168527 |
tcagagggagattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctgatgtggct |
56168626 |
T |
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| Q |
101 |
catgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgaaggaaagacaggtgtggctacaacattcc |
200 |
Q |
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| T |
56168627 |
catgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgcaggaaagacaggtgtggctacaacattcc |
56168726 |
T |
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| Q |
201 |
tgactcttcaggacactg |
218 |
Q |
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|||||||||||||||||| |
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| T |
56168727 |
tgactcttcaggacactg |
56168744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 707183 - 706966
Alignment:
| Q |
1 |
tcagagggagattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctgatgtggct |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
707183 |
tcagagggaaattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctgatgtggct |
707084 |
T |
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| Q |
101 |
catgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgaaggaaagacaggtgtggctacaacattcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||| |
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| T |
707083 |
catgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtaccggccgtgcaggaaagacgggtgtggctacaacattcc |
706984 |
T |
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| Q |
201 |
tgactcttcaggacactg |
218 |
Q |
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|||||||||||||||||| |
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| T |
706983 |
tgactcttcaggacactg |
706966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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