View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_594 (Length: 213)
Name: NF11737A_low_594
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_594 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 37181365 - 37181187
Alignment:
| Q |
18 |
tgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggagaactataagagcttttgcaattttaagttagt |
117 |
Q |
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| T |
37181365 |
tgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggagaactataagagcttttgcaattttaagttagt |
37181266 |
T |
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| Q |
118 |
tcaacttcctgtgtttcactttgacaaaagcatttggttgcctacattagttataaccccaaaatagtccaatgtgatg |
196 |
Q |
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| T |
37181265 |
tcaacttcctgtgtttcactttgacaaaagcatttggttgcctacattagttataaccccaaaatagtccaatgtgatg |
37181187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 37180381 - 37180512
Alignment:
| Q |
18 |
tgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttgga-gaactat-aagagcttttgcaattttaagtta |
115 |
Q |
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| T |
37180381 |
tgagaagcatagggatagtgggtggtcttatatagattgagatagatttgaaggagggtagttcggaagaaccatcaagagcttttgcaatttttagtta |
37180480 |
T |
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| Q |
116 |
gttcaacttcctgtgtttcactttgacaaaag |
147 |
Q |
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| T |
37180481 |
gttcaacttattgggtttcactttgacaaaag |
37180512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 37189473 - 37189365
Alignment:
| Q |
18 |
tgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttgga-gaactat-aagagcttttgcaattttaagtta |
115 |
Q |
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| T |
37189473 |
tgagaagcatagggatagtgggtgatcttatatagattgagagagatttgaaggagggtagttcggatgaaccatcaagagcttttgcaatttttagtta |
37189374 |
T |
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| Q |
116 |
gttcaactt |
124 |
Q |
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| T |
37189373 |
gttcaactt |
37189365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 38704443 - 38704569
Alignment:
| Q |
26 |
aaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggagaactataagagcttttgcaattttaagttagttcaacttc |
125 |
Q |
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| T |
38704443 |
aaagggatagtggatggttttatatagagtagaagagatttgaatcaaggtagcttggagaataataaaagcatttgcaatcttaagttacttcaacttc |
38704542 |
T |
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| Q |
126 |
ctgtgtttcactttgacaaaagcattt |
152 |
Q |
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| T |
38704543 |
ctgtgttttactttcacaaaaccattt |
38704569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 37188053 - 37188197
Alignment:
| Q |
18 |
tgagaaggaaaggggtagtggatggtct--tatatagagtgagagagatttgaaggagagttgtttggagaacta-taagagcttttgcaatt------- |
107 |
Q |
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| T |
37188053 |
tgagaaggaaaggagtagtggatggtcttatatatagagtaagcaagatttgaaggagggtagtttggagaacaactacgagcttttgcaatttttattt |
37188152 |
T |
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| Q |
108 |
-ttaagttagttcaacttcctgtgtttcactttgacaaaagcatt |
151 |
Q |
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| T |
37188153 |
ctttagtttgtttaacttcctctgtttcactttgacaaaatcatt |
37188197 |
T |
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