View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_597 (Length: 212)
Name: NF11737A_low_597
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_597 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 52740980 - 52740809
Alignment:
| Q |
17 |
atcaagaaggttgagaaagattccaacaaacttgtcactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatg |
116 |
Q |
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| T |
52740980 |
atcaagaaggttgagaaagaatcacagaaacaagtgactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatg |
52740881 |
T |
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| Q |
117 |
ttcatgcagccatcattgtgttttctcctggtgacaaactattttgttttggccaacccgacacatactctg |
188 |
Q |
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| T |
52740880 |
ttcatgcagccatcattgtgttttctcctggtgacaaactattttgttttggccaacccgacacatactctg |
52740809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 13539583 - 13539425
Alignment:
| Q |
17 |
atcaagaaggttgagaaagattccaacaaacttgtcactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatg |
116 |
Q |
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| T |
13539583 |
atcaagaagattgacaaagcatcgaacagacaagtcacattctcaaagcgaagacaaggtctattcaaaaaagcaagtgaactttgtgtcttatgtgacg |
13539484 |
T |
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| Q |
117 |
ttcatgcagccatcattgtgttttctcctggtgacaaactattttgttttggccaaccc |
175 |
Q |
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| T |
13539483 |
cacatgtagccatggtggtgttttccccgtccgacaaactattttgctttggtcaaccc |
13539425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 45394369 - 45394206
Alignment:
| Q |
17 |
atcaagaaggttgagaaagattccaacaaacttgtcactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatg |
116 |
Q |
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| T |
45394369 |
atcaagaaggttgagaaagattccaacaaacttgtcactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatg |
45394270 |
T |
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| Q |
117 |
ttcatgcagccatcattgtgttttctcctggtgacaaactattttgttttggccaacccgacac |
180 |
Q |
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| T |
45394269 |
ttcatgcagccatcattgtgttttcccctggtgacaaactctactgttttgggcaacccgacac |
45394206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 35781981 - 35782121
Alignment:
| Q |
17 |
atcaagaaggttgagaaagattccaacaaacttgtcactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatg |
116 |
Q |
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| T |
35781981 |
atcaaaaagcttgaaaaagaaaccaacaagcaagtcactttctcaaaaagaagacaaggtttattccgaaaagcgagtgaactttgcactttatgtgatg |
35782080 |
T |
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| Q |
117 |
ttcatgcagccatcattgtgttttctcctggtgacaaacta |
157 |
Q |
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| T |
35782081 |
ttcatgcagccatcatcgtgttttctcctgctggcaaacta |
35782121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 9668559 - 9668401
Alignment:
| Q |
17 |
atcaagaaggttgagaaagattccaacaaacttgtcactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatg |
116 |
Q |
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||||||||| |||| |||| || |||| || ||||| |||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||| | |
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| T |
9668559 |
atcaagaagattgacaaagcatcgaacagacaagtcacattctcaaagcgaagacaaggtctattcaaaaaagcaagtgaactttgtgtcttatgtgacg |
9668460 |
T |
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| Q |
117 |
ttcatgcagccatcattgtgttttctcctggtgacaaactattttgttttggccaaccc |
175 |
Q |
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| T |
9668459 |
cacatgtagccatggtggtgttttccccgtccgacaaactattttgctttggtcaaccc |
9668401 |
T |
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