View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_599 (Length: 212)

Name: NF11737A_low_599
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_599
NF11737A_low_599
[»] scaffold0016 (1 HSPs)
scaffold0016 (24-212)||(53816-54004)
[»] chr4 (2 HSPs)
chr4 (113-176)||(15707358-15707421)
chr4 (171-212)||(15707440-15707481)
[»] scaffold0642 (2 HSPs)
scaffold0642 (113-176)||(4102-4165)
scaffold0642 (171-212)||(4184-4225)
[»] scaffold0345 (2 HSPs)
scaffold0345 (113-176)||(14014-14077)
scaffold0345 (171-212)||(14096-14137)
[»] scaffold0105 (2 HSPs)
scaffold0105 (113-176)||(24904-24967)
scaffold0105 (171-212)||(24844-24885)
[»] scaffold1526 (2 HSPs)
scaffold1526 (113-168)||(1249-1304)
scaffold1526 (171-212)||(1176-1217)
[»] chr8 (2 HSPs)
chr8 (113-176)||(44495504-44495567)
chr8 (174-212)||(44495589-44495627)
[»] chr2 (2 HSPs)
chr2 (113-168)||(3378229-3378284)
chr2 (171-212)||(3378316-3378357)
[»] chr6 (1 HSPs)
chr6 (28-112)||(21221835-21221922)


Alignment Details
Target: scaffold0016 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 54004 - 53816
Alignment:
Q  24 agtactgaccaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaatacttacttcctc 123  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  54004 agtactgacaaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaatacttactttctc 53905  T
Q  124 tctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattcactctagagcggtgagtggcttcgtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53904 tctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattcactccagagcggtgagtggcttcgtt 53816  T

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Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 15707358 - 15707421
Alignment:
Q  113 cttacttcctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 176  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707358 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 15707421  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 15707440 - 15707481
Alignment:
Q  171 acccatccatgaattcactctagagcggtgagtggcttcgtt 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  15707440 acccatccatgaattcactccagatcggtgagtggcttcgtt 15707481  T

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Target: scaffold0642 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 4102 - 4165
Alignment:
Q  113 cttacttcctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 176  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4102 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 4165  T

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Target: scaffold0642; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 4184 - 4225
Alignment:
Q  171 acccatccatgaattcactctagagcggtgagtggcttcgtt 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  4184 acccatccatgaattcactccagatcggtgagtggcttcgtt 4225  T

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Target: scaffold0345 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 14014 - 14077
Alignment:
Q  113 cttacttcctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 176  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14014 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 14077  T

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Target: scaffold0345; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 14096 - 14137
Alignment:
Q  171 acccatccatgaattcactctagagcggtgagtggcttcgtt 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  14096 acccatccatgaattcactccagatcggtgagtggcttcgtt 14137  T

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Target: scaffold0105 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 24967 - 24904
Alignment:
Q  113 cttacttcctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 176  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24967 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 24904  T

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Target: scaffold0105; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 24885 - 24844
Alignment:
Q  171 acccatccatgaattcactctagagcggtgagtggcttcgtt 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  24885 acccatccatgaattcactccagatcggtgagtggcttcgtt 24844  T

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Target: scaffold1526 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 1304 - 1249
Alignment:
Q  113 cttacttcctctctaacatcattccaatccggtccttcttctctcacactctattc 168  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1304 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 1249  T

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Target: scaffold1526; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 1217 - 1176
Alignment:
Q  171 acccatccatgaattcactctagagcggtgagtggcttcgtt 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  1217 acccatccatgaattcactccagatcggtgagtggcttcgtt 1176  T

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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 44495504 - 44495567
Alignment:
Q  113 cttacttcctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 176  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  44495504 cttactttctctctaacatcattccaatccggttcttcttctctcacactccattcatacccat 44495567  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 44495589 - 44495627
Alignment:
Q  174 catccatgaattcactctagagcggtgagtggcttcgtt 212  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  44495589 catccatgaattcactccagatcggtgagtggcttcgtt 44495627  T

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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 3378229 - 3378284
Alignment:
Q  113 cttacttcctctctaacatcattccaatccggtccttcttctctcacactctattc 168  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378229 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 3378284  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 3378316 - 3378357
Alignment:
Q  171 acccatccatgaattcactctagagcggtgagtggcttcgtt 212  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  3378316 acccatccatgaattcactccagatcggtgagtggcttcgtt 3378357  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 21221835 - 21221922
Alignment:
Q  28 ctgaccaaattaccaaagaggatcaa---aacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaata 112  Q
    |||| |||||||||||||||||||||   |||| | || |||||||| || |||||||||||||||||||||||||||||||| ||||    
T  21221835 ctgaacaaattaccaaagaggatcaagaaaacactgaaaataggaattatctgtggctgatgatgttgctcctaatagtgatataata 21221922  T

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