View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_600 (Length: 212)
Name: NF11737A_low_600
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_600 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 42 - 201
Target Start/End: Original strand, 885531 - 885690
Alignment:
| Q |
42 |
ttatgtacattaacaaaatgtaagatgaactagattttccccttttattaggccttgaaatgcataatccatatattccacatatagtaatagaaatact |
141 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
885531 |
ttatgtacattaacaaaatgaaagatgaactagattttccccttttattaggccttgaaatgcataatccatatattccacatatagtaatagaaatact |
885630 |
T |
|
| Q |
142 |
agttaacaaaaggtagaagcaattaatgcattcctacaaactctccctctccatctcatt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
885631 |
agttaacaaaaggtagaagcaattaatgcattcctacaaactctccctctccaactcatt |
885690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 1849107 - 1849159
Alignment:
| Q |
58 |
aatgtaagatgaactagattttc-cccttttattaggccttgaaatgcataat |
109 |
Q |
| |
|
|||| |||||||||||| |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
1849107 |
aatgaaagatgaactagtttttttcccttatattaggccttgaaatgcataat |
1849159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University