View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_610 (Length: 207)
Name: NF11737A_low_610
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_610 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 12416348 - 12416552
Alignment:
| Q |
3 |
ataaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaaaattctttcagaaacttggt |
102 |
Q |
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| T |
12416348 |
ataaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaaaattctttcagaaacttggt |
12416447 |
T |
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| Q |
103 |
tttttgccataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttgaaaccataatcataagaact |
202 |
Q |
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| T |
12416448 |
tttttgccatagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttgaaatcataagaataagaact |
12416547 |
T |
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| Q |
203 |
attgg |
207 |
Q |
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||||| |
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| T |
12416548 |
attgg |
12416552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 12428408 - 12428612
Alignment:
| Q |
3 |
ataaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagacaattcatattccaggaattgtaggtaaaattctttcagaaacttggt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12428408 |
ataaaacaagtcttcagcaaggaactaggtcacagaaaagtgaagtcatagataattcatattccaggaattgtagttaaaattctttcagaaacttggt |
12428507 |
T |
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| Q |
103 |
tttttgccataactgaatagtgaaatttcaccaactgccgtacagttgtagggttagcatttgaaacattctcggatttgaaaccataatcataagaact |
202 |
Q |
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| T |
12428508 |
tttttgccatagctgaaaagtgaaatttcaccaactgctgtacagttgtagggtaagcatttgaaacattctcggatttgaaatcataagaataagaact |
12428607 |
T |
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| Q |
203 |
attgg |
207 |
Q |
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||||| |
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| T |
12428608 |
attgg |
12428612 |
T |
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