View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_611 (Length: 207)
Name: NF11737A_low_611
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_611 |
 | |
|
| [»] scaffold0140 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0140 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 36420 - 36232
Alignment:
| Q |
19 |
agtcattacactacatcttcatatatgaaatgaacattgcccaagatacaaccgacagaaccataaacaaatttgcctgctttcttgaatattggagctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
36420 |
agtcattacactacatcttcatatatgaaatgaacattgcccaaaatacaaccaacataaccataaacaaatttgccttctttcttgagtattggagctt |
36321 |
T |
|
| Q |
119 |
cttctttaacttctcatttttgttgattccaaattccttcattattctagtaatgtctttcaacctctcttcacaattgcaatcacatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36320 |
cttctttaacttctcatttttgttgattccgaattccttcattattccagtaatgtctttcaacatctcttcacaattgcaatcacatg |
36232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 26 - 206
Target Start/End: Complemental strand, 23573720 - 23573540
Alignment:
| Q |
26 |
acactacatcttcatatatgaaatgaacattgcccaagatacaaccgacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttcttt |
125 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||||||||||||||||| | || ||||||||||||||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
23573720 |
acactacatcgtcagatatgtaatgaacattgcccaagatacaaccaatgtaaacataaacaaatttgccttctttcttgagtattggagtttcttcttt |
23573621 |
T |
|
| Q |
126 |
aacttctcatttttgttgattccaaattccttcattattctagtaatgtctttcaacctctcttcacaattgcaatcacat |
206 |
Q |
| |
|
||||| ||||||||||||||||| ||||| || ||||||| |||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
23573620 |
aacttgtcatttttgttgattccgaattcgttgattattccagtaatgtctttcagcagctcttcacaattgcaatcacat |
23573540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 31814943 - 31815023
Alignment:
| Q |
59 |
ccaagatacaaccgacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcattttt |
139 |
Q |
| |
|
|||||| |||| | ||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| |
|
|
| T |
31814943 |
ccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgttttt |
31815023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 13507605 - 13507478
Alignment:
| Q |
77 |
aaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttcattattctagtaatgtct |
176 |
Q |
| |
|
|||||||||||||||||| | ||| ||||| |||| ||||||||||||||||||||| |||||||||||| || |||||||||||| |||||||||| |
|
|
| T |
13507605 |
aaccataaacaaatttgcattcttccttgagtattagagcttcttctttaacttctcgtttttgttgattttgaaatccttcattatttgagtaatgtct |
13507506 |
T |
|
| Q |
177 |
ttcaacctctcttcacaattgcaatcac |
204 |
Q |
| |
|
|||| | ||||||||||||||||||||| |
|
|
| T |
13507505 |
ttcagcatctcttcacaattgcaatcac |
13507478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 80 - 207
Target Start/End: Original strand, 13507647 - 13507774
Alignment:
| Q |
80 |
cataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttcattattctagtaatgtctttc |
179 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||||||||||||||||||| |||||| |||||||| |||| || ||||||||||||| |||||||| |||| |
|
|
| T |
13507647 |
cataaacaaatttgccttcttccttgagtattggagcttcttctttagcttctcgtttttgtttattctgaaatccttcattattccagtaatgtttttc |
13507746 |
T |
|
| Q |
180 |
aacctctcttcacaattgcaatcacatg |
207 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
13507747 |
ggcatctcttcacaattgcaatcacatg |
13507774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 207
Target Start/End: Original strand, 7799387 - 7799536
Alignment:
| Q |
58 |
cccaagatacaaccgacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattcctt |
157 |
Q |
| |
|
||||||| |||| | ||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||||||||| |||||||| || || || |
|
|
| T |
7799387 |
cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcatttttcttgattcccaaatcttt |
7799486 |
T |
|
| Q |
158 |
cattattctagtaatgtctttcaacctctcttcacaattgcaatcacatg |
207 |
Q |
| |
|
|| ||| ||| | ||||||| | | ||||||||||||||||||||| |
|
|
| T |
7799487 |
caatatcacagtcaaatctttcatcaccacttcacaattgcaatcacatg |
7799536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 207
Target Start/End: Original strand, 19398488 - 19398637
Alignment:
| Q |
58 |
cccaagatacaaccgacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattcctt |
157 |
Q |
| |
|
||||||| |||| | ||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| || ||||||||||| |||||||| || || || |
|
|
| T |
19398488 |
cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaaattctcatttttcttgattcccaaatcttt |
19398587 |
T |
|
| Q |
158 |
cattattctagtaatgtctttcaacctctcttcacaattgcaatcacatg |
207 |
Q |
| |
|
|| ||| ||| | ||||||| | | ||||||||||||||||||||| |
|
|
| T |
19398588 |
caatatcacagttaaatctttcatcaccacttcacaattgcaatcacatg |
19398637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 3429 - 3519
Alignment:
| Q |
58 |
cccaagatacaaccgacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattcc |
148 |
Q |
| |
|
||||||| |||| | ||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
3429 |
cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgtttttcttcattcc |
3519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 22059336 - 22059425
Alignment:
| Q |
59 |
ccaagatacaaccgacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattcc |
148 |
Q |
| |
|
|||||| |||| | ||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
22059336 |
ccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgtttttcttcattcc |
22059425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University