View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_612 (Length: 207)
Name: NF11737A_low_612
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_612 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 16911625 - 16911456
Alignment:
| Q |
17 |
tcacatttgtcatttgagatagataaagagtggttagacaatttaatttaccaagtggaggaagttgacgacagtttatgcacttcatgagtttaacatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
16911625 |
tcacatttgtcatttgagatagataaagagtgtttaaaaaaggtaatttaccaagtggaggaagttggctacagtttatgcaattcatgagtttaacatc |
16911526 |
T |
|
| Q |
117 |
aaccaaacatgccaaactagaaatatctgtcatccagtttggaatattcattccctcgtaaccgctcaac |
186 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16911525 |
aaccaaacgtcccaaaatagaaatatctgtcatccagtttggaatattcattccccggtaaccgctcaac |
16911456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 16916820 - 16916644
Alignment:
| Q |
17 |
tcacatttgtcatttgagatagataaagagtggttagacaatttaatttaccaagtggaggaagttgacgacagtttatgcacttcatgagtttaacatc |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
16916820 |
tcacatttgtcatttgagataaataaagagtggttaacaaaggtaatttaccaagtggaggaagttgactacagtttatgcaattcatgagtttaacatc |
16916721 |
T |
|
| Q |
117 |
aaccaaacatgccaaactagaaatatctgtcatccagtttggaatattcattccctcgtaaccgctcaacacgaaac |
193 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
16916720 |
aaccaaacgtcccaaaatagaaatatctgtcatccagtttggaatattcattccgccgtaacggctcaacccgaaac |
16916644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 16974935 - 16974869
Alignment:
| Q |
26 |
tcatttgagatagataaagagtggttagacaatttaatttaccaagtggaggaagttgacgacagtttatgcactt |
101 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
16974935 |
tcatttgagatagataaagagtggttaaac---------taccaagtcgaggaagttgacgacagtttctgcactt |
16974869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 18807727 - 18807686
Alignment:
| Q |
39 |
ataaagagtggttagacaatttaatttaccaagtggaggaag |
80 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
18807727 |
ataaagagtggttaaacaaggtaatttaccaagtggaggaag |
18807686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 18874724 - 18874683
Alignment:
| Q |
39 |
ataaagagtggttagacaatttaatttaccaagtggaggaag |
80 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
18874724 |
ataaagagtggttaaacaaggtaatttaccaagtggaggaag |
18874683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 3328 - 3280
Alignment:
| Q |
33 |
agatagataaagagtggttagacaatttaatttaccaagtggaggaagt |
81 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
3328 |
agatacataaagagtggttaaacaaggtaatttaccaagtggaggaagt |
3280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 7980 - 8021
Alignment:
| Q |
39 |
ataaagagtggttagacaatttaatttaccaagtggaggaag |
80 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
7980 |
ataaagagtggttaaacaaggtaatttaccaagtggaggaag |
8021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University