View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_616 (Length: 204)
Name: NF11737A_low_616
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_616 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 25 - 185
Target Start/End: Original strand, 4235918 - 4236078
Alignment:
| Q |
25 |
gctgaaaccgccgcgacaaaatttataacaagtgctgccacattcactgttaattgaaattgaatgagtttttgaatgttattgtaaacacatcttcccc |
124 |
Q |
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| T |
4235918 |
gctgaaaccgccgcgacaaaatttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttcccc |
4236017 |
T |
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| Q |
125 |
aatttataactgttactatagatgcaaaattgtcatctaatataacaatatctgaactctc |
185 |
Q |
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| T |
4236018 |
aatttataactgttacaatagatgcaaaattgtcatctaatataacaatatctgaactctc |
4236078 |
T |
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Target: chr6 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 25 - 185
Target Start/End: Original strand, 6185042 - 6185202
Alignment:
| Q |
25 |
gctgaaaccgccgcgacaaaatttataacaagtgctgccacattcactgttaattgaaattgaatgagtttttgaatgttattgtaaacacatcttcccc |
124 |
Q |
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| T |
6185042 |
gctgaaaccgccgcaacgaaattgataacaagggctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatcttcccc |
6185141 |
T |
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| Q |
125 |
aatttataactgttactatagatgcaaaattgtcatctaatataacaatatctgaactctc |
185 |
Q |
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| T |
6185142 |
agtttaacactgttacgatagatgcaaaattgtcatctaatataacaatatctgaactctc |
6185202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 19592829 - 19592961
Alignment:
| Q |
44 |
aatttataacaagtgctgccacattcactgttaattgaaattgaatgagtttttgaatgttattgtaaacacatcttccccaatttataactgttactat |
143 |
Q |
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|||| |||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||| |
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| T |
19592829 |
aattgataacaagtgctgccacattcact---------aattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttaaaattgttactat |
19592919 |
T |
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| Q |
144 |
agatgcaaaattgtcatctaatataacaatatctgaactctc |
185 |
Q |
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| T |
19592920 |
agatgcaaaattgtcatctaatataacaatatctgagctctc |
19592961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 38356883 - 38356962
Alignment:
| Q |
46 |
tttataacaagtgctgccacattcactgttaattgaaattgaatgagtttttgaatgttattgtaaacacatcttcccca |
125 |
Q |
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||||| ||||||||||| ||||||||||||| |||||| ||||| | ||| || ||||| |||||||||||||||||||| |
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| T |
38356883 |
tttatcacaagtgctgcaacattcactgttagttgaaactgaataaatttctggatgttgttgtaaacacatcttcccca |
38356962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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