View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_617 (Length: 203)
Name: NF11737A_low_617
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_617 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 216780 - 216658
Alignment:
| Q |
32 |
gacatcagagttcttgctccagatcttatcaggataattgaaaactctatccttacctttcgtctattcctgaaaagggacaagaaaaagtcaagtgtta |
131 |
Q |
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| T |
216780 |
gacatcagagttcttgctccagatcttatcaggataattgaaaactctatccttacctttcgtctattcctgaaaagggacaagaaaaagtcaagtgtta |
216681 |
T |
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| Q |
132 |
tcaacctgtttggaaatcagaat |
154 |
Q |
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| T |
216680 |
tcaacctgtttggaaatcagaat |
216658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 216600 - 216636
Alignment:
| Q |
146 |
aatcagaatttaccttctcaagagtagactgaacctg |
182 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
216600 |
aatcagaatttaccttctcaagagtagactgaacctg |
216636 |
T |
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