View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_618 (Length: 203)

Name: NF11737A_low_618
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_618
NF11737A_low_618
[»] chr8 (3 HSPs)
chr8 (6-192)||(24784985-24785171)
chr8 (6-192)||(35195821-35196007)
chr8 (80-142)||(40536588-40536650)
[»] chr7 (2 HSPs)
chr7 (6-192)||(6792808-6792994)
chr7 (6-192)||(6205239-6205425)
[»] chr1 (12 HSPs)
chr1 (6-192)||(7797700-7797886)
chr1 (6-192)||(8055171-8055357)
chr1 (6-192)||(28705148-28705334)
chr1 (6-192)||(46019215-46019401)
chr1 (6-192)||(49572851-49573037)
chr1 (8-192)||(46077168-46077352)
chr1 (6-153)||(33695966-33696113)
chr1 (112-192)||(33699357-33699437)
chr1 (6-192)||(43467123-43467303)
chr1 (9-159)||(19552785-19552934)
chr1 (8-159)||(37752435-37752586)
chr1 (90-145)||(5321497-5321552)
[»] scaffold0012 (1 HSPs)
scaffold0012 (6-192)||(109120-109306)
[»] chr4 (1 HSPs)
chr4 (6-192)||(54908330-54908516)
[»] chr3 (2 HSPs)
chr3 (37-158)||(34543795-34543916)
chr3 (80-143)||(46911478-46911541)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 8e-97; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 6 - 192
Target Start/End: Complemental strand, 24785171 - 24784985
Alignment:
Q  6 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24785171 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 24785072  T
Q  106 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  24785071 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagcgatctccat 24784985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 35195821 - 35196007
Alignment:
Q  6 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35195821 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 35195920  T
Q  106 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  35195921 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagcgatctccat 35196007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 40536588 - 40536650
Alignment:
Q  80 accccacatctctgcatgaagagcatcacacgcgccaatcttgcggacaaaacctttgatcca 142  Q
    |||||||||||| ||||| ||||||||||| || ||||| ||||||  |||||| ||||||||    
T  40536588 accccacatctcagcatgcagagcatcacaagctccaattttgcggcaaaaacccttgatcca 40536650  T

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Target: chr7 (Bit Score: 179; Significance: 8e-97; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 6792808 - 6792994
Alignment:
Q  6 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6792808 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 6792907  T
Q  106 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  6792908 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagcgatctccat 6792994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 192
Target Start/End: Complemental strand, 6205425 - 6205239
Alignment:
Q  6 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6205425 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 6205326  T
Q  106 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  6205325 cacacacgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagcgatctccat 6205239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 8e-97; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 6 - 192
Target Start/End: Complemental strand, 7797886 - 7797700
Alignment:
Q  6 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7797886 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 7797787  T
Q  106 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  7797786 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagcgatctccat 7797700  T

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Target: chr1; HSP #2
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 8055171 - 8055357
Alignment:
Q  6 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8055171 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 8055270  T
Q  106 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  8055271 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagcgatctccat 8055357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 6 - 192
Target Start/End: Complemental strand, 28705334 - 28705148
Alignment:
Q  6 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28705334 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 28705235  T
Q  106 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  28705234 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagcgatctccat 28705148  T

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Target: chr1; HSP #4
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 46019215 - 46019401
Alignment:
Q  6 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46019215 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 46019314  T
Q  106 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  46019315 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagcgatctccat 46019401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 49572851 - 49573037
Alignment:
Q  6 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49572851 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 49572950  T
Q  106 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  49572951 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagcgatctccat 49573037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 46077352 - 46077168
Alignment:
Q  8 caattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcatca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46077352 caattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcaagaagagcatca 46077253  T
Q  108 cacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    || ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  46077252 caagcgtcaatcttgcggacaaaacctttgattcatctaccattagcatcccgaagtaagcctccacaacccgagcgatctccat 46077168  T

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Target: chr1; HSP #7
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 33695966 - 33696113
Alignment:
Q  6 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 105  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  33695966 agcatttttgaatcactttcaacgcaaagctgagaaatatcgtccctccaagccaacattagaccaaggtacataccccacatatctgcatgaagagcat 33696065  T
Q  106 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattag 153  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  33696066 cacaagcgccaatcttgcggacaaaacctttgatccatctaccattag 33696113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 33699357 - 33699437
Alignment:
Q  112 cgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  33699357 cgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagcgatctccat 33699437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 43467123 - 43467303
Alignment:
Q  6 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 105  Q
    ||||| ||||||| |||||||||| | | |||||||||  ||||||||      ||||||||||| | |||||||||  |||||||||||| ||||||||    
T  43467123 agcaactttgaattactttcaacgaacaactgagaaatgtcgtccctc------aactctagacccatgtacatacctgacatctctgcataaagagcat 43467216  T
Q  106 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    ||||  || |||||||||||||||||  | | |||||||||   |||||||||||||| |  |||||||||||||| |||| |||||    
T  43467217 cacaaacgtcaatcttgcggacaaaatatattatccatctaatgttagcatcccgaaggaggcctccacaacccgaatgatctccat 43467303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 19552785 - 19552934
Alignment:
Q  9 aattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcatcac 108  Q
    ||||||||||||||||||| ||| | |||| ||||| ||||| || |||||||||||| ||| |||||||||||||| |||||| || ||| ||||||||    
T  19552785 aattttgaatcactttcaatgcacaactgaaaaatatcgtccttcaaagccaactcta-acctaggtacataccccatatctctccacgaaaagcatcac 19552883  T
Q  109 acgcgccaatcttgcggacaaaacctttgatccatctaccattagcatccc 159  Q
    | |   ||| |||||| |||||| ||| |||||||||  | ||||||||||    
T  19552884 aggtatcaaccttgcgaacaaaaacttagatccatctgtcgttagcatccc 19552934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 37752586 - 37752435
Alignment:
Q  8 caattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcatca 107  Q
    ||||||||||||||| || |  || || || ||||| || || | |||||| | ||||| |||||  |||| ||||||||| |||||||| |||||||||    
T  37752586 caattttgaatcactctccatacagagatgtgaaattccatcacgccaagctagctctaaaccaaaatacaaaccccacatttctgcatgtagagcatca 37752487  T
Q  108 cacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatccc 159  Q
    ||  | ||||||||||| ||||| | ||||| |||||||||||||| |||||    
T  37752486 caaacaccaatcttgcgcacaaatcttttgaaccatctaccattagtatccc 37752435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 5321552 - 5321497
Alignment:
Q  90 tctgcatgaagagcatcacacgcgccaatcttgcggacaaaacctttgatccatct 145  Q
    ||||||||||||||||||||  | ||||||||||| ||||| ||||||| ||||||    
T  5321552 tctgcatgaagagcatcacaaactccaatcttgcgtacaaatcctttgagccatct 5321497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 109120 - 109306
Alignment:
Q  6 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  109120 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgtatgaagagcat 109219  T
Q  106 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  109220 cacaagcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaagcctccacaacccgagcgatctccat 109306  T

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Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 54908330 - 54908516
Alignment:
Q  6 agcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 105  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54908330 agcaattttgaatcactttcaatgcaaagctgagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcat 54908429  T
Q  106 cacacgcgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaaacctccacaacccgagtgatgtccat 192  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  54908430 cacaagtgccaatcttgcggacaaaacctttgatccatctaccattagcatcccgaagtaagcctccacaacccgagcgatctccat 54908516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 34543916 - 34543795
Alignment:
Q  37 gagaaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcatcacacgcgccaatcttgcggacaaaaccttt 136  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||  | |||||||||| ||||||||||||    
T  34543916 gagaaatgtcgtccctccaagcaaactctagaccaaggtacataccacacatctctgcatgaagaacatcacaaacaccaatcttgcagacaaaaccttt 34543817  T
Q  137 gatccatctaccattagcatcc 158  Q
    ||||||| | ||||||||||||    
T  34543816 gatccatttgccattagcatcc 34543795  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 46911541 - 46911478
Alignment:
Q  80 accccacatctctgcatgaagagcatcacacgcgccaatcttgcggacaaaacctttgatccat 143  Q
    |||||||||||| ||||| ||||||||||| || ||||| ||||||  |||||| |||||||||    
T  46911541 accccacatctcagcatgcagagcatcacaagctccaattttgcggctaaaacccttgatccat 46911478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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