View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_619 (Length: 202)
Name: NF11737A_low_619
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_619 |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 31502655 - 31502812
Alignment:
| Q |
22 |
agtaaaaagaagagtaaaatgcacataaaaggtagtgtgtacttccacattttataagtgcaattccaaaggaaagagcttgaaatatatatggatcatc |
121 |
Q |
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| T |
31502655 |
agtaaaaagaagagtaaaatgcacataaaaggtagtgtgtacttccacattttataagtgcaattccaaaggaaagagcttgaaatatatatggatcatc |
31502754 |
T |
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| Q |
122 |
acacaagactttatgcggtatagacatgtcccatcttatattgatatattcttggaga |
179 |
Q |
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| T |
31502755 |
acacaagactttatacggtgtagacatgtcccatcctatattgatatattattggaga |
31502812 |
T |
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Target: chr2 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 29276331 - 29276166
Alignment:
| Q |
22 |
agtaaaaagaagagtaaaatgcacataaaaggtagtgtgtacttccacattttataagtgcaat----------tccaaaggaaagagcttgaaatatat |
111 |
Q |
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| T |
29276331 |
agtaaaaagaagagtaaaatgcacacaaagggtagtgtgtatttgtacatttaataagtgcaatagtatcatattcctaagggaagagcttgaaatatat |
29276232 |
T |
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| Q |
112 |
atggatcatcacacaagactttatgcggtatagacatgtcccatcttatattgatatattcttggaga |
179 |
Q |
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| T |
29276231 |
atggatcatcaca--agactttatacggtatagacatgtcccatcttatattgatatattattggaga |
29276166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 55858267 - 55858418
Alignment:
| Q |
28 |
aagaagagtaaaatgcacataaaaggtagtgtgtacttccacattttataagtgcaat----------tccaaaggaaagagcttgaaatatatatggat |
117 |
Q |
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| T |
55858267 |
aagaagagtaaaatgcacacaaagggtagtgtgtatttgtacatttaataagtgcaatagtatcatattcctaaggtaagagcttgaaatatatatggat |
55858366 |
T |
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| Q |
118 |
catcacacaagactttatgcggtatagacatgtcccatcttatattgatatatt |
171 |
Q |
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| T |
55858367 |
catcaca--agactttatacggtatagacatgtcccatcttatattgatatatt |
55858418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 27919 - 27959
Alignment:
| Q |
22 |
agtaaaaagaagagtaaaatgcacataaaaggtagtgtgta |
62 |
Q |
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| T |
27919 |
agtaaaaagaagagtaaaatgcacataaaaggtagtgtgta |
27959 |
T |
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