View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_62 (Length: 421)
Name: NF11737A_low_62
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_62 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 22 - 421
Target Start/End: Complemental strand, 41092199 - 41091799
Alignment:
| Q |
22 |
ccagaaactccataacacaacaatcttaatcacgtaacacacccactttgaattcttgcctttgatcaaagactcaaagtgaaggccgaatgtcattgtg |
121 |
Q |
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| T |
41092199 |
ccagaaactccataacacaacaatcttaatcacgtaacacacccactttgaattcttgcctttgatcaaagactcaaagtgaaggccgaatgtcattgtg |
41092100 |
T |
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| Q |
122 |
agttacctacg----ccaccccatccatttgcacacttcacaccagactaagaaagaaaatggccatatgataggaatgtatgatttatctcttccttct |
217 |
Q |
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| T |
41092099 |
agttacctacgtacgccaccccatccatttgcacacttcacaccagactaagaaagaaaatggccatatgataggaatgcatgatttatctcttccttct |
41092000 |
T |
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| Q |
218 |
tacaaaatcagaaaacacaagaaggaccaaagatatataggattaattatacctctgagttttattcagtggcagaggcatcatttttaagatggaccaa |
317 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41091999 |
tacaaaatcagaaaacacaagaaggaccaaag----ataggattaattatacctctgagttttattcagtggcagaggcatcatttttaagatggaccaa |
41091904 |
T |
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| Q |
318 |
atac-nnnnnnnnnttaagttgataccattaccaacgaggttgagttaagcgcaagagactaaacacataataaggtgaatcataattcgaatctcaatt |
416 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41091903 |
atacaaaaaaaaaattaagttgataccattaccaaagaggttgagttaagcgcaagagactaaactcataataaggtgaatcataattcgaatctcaatt |
41091804 |
T |
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| Q |
417 |
taaag |
421 |
Q |
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| T |
41091803 |
taaag |
41091799 |
T |
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