View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_621 (Length: 202)
Name: NF11737A_low_621
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_621 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 3895410 - 3895519
Alignment:
| Q |
18 |
cgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacacaaaagatcaaggagactgt |
117 |
Q |
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| T |
3895410 |
cgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacacaaaagatcaaggagactgt |
3895509 |
T |
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| Q |
118 |
tgttggaaag |
127 |
Q |
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| T |
3895510 |
tgttggaaag |
3895519 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 3895538 - 3895574
Alignment:
| Q |
149 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
185 |
Q |
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| T |
3895538 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
3895574 |
T |
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