View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_623 (Length: 201)

Name: NF11737A_low_623
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_623
NF11737A_low_623
[»] chr5 (12 HSPs)
chr5 (18-174)||(14342859-14343015)
chr5 (18-174)||(20455189-20455345)
chr5 (20-173)||(21108428-21108581)
chr5 (18-170)||(11964872-11965024)
chr5 (18-126)||(20833202-20833309)
chr5 (18-104)||(24226678-24226764)
chr5 (21-126)||(23414099-23414204)
chr5 (26-107)||(33627605-33627686)
chr5 (129-164)||(11764802-11764837)
chr5 (109-168)||(20455317-20455376)
chr5 (137-171)||(14343051-14343085)
chr5 (144-174)||(21108464-21108494)
[»] scaffold0079 (3 HSPs)
scaffold0079 (18-174)||(5216-5372)
scaffold0079 (105-173)||(5377-5445)
scaffold0079 (129-174)||(5364-5409)
[»] chr7 (24 HSPs)
chr7 (18-174)||(21676050-21676206)
chr7 (18-173)||(28719374-28719529)
chr7 (65-174)||(45148461-45148570)
chr7 (18-173)||(4483647-4483802)
chr7 (26-168)||(8564726-8564868)
chr7 (21-174)||(16382466-16382619)
chr7 (18-171)||(39292876-39293028)
chr7 (64-171)||(46472886-46472992)
chr7 (52-122)||(21539365-21539435)
chr7 (21-174)||(44306318-44306472)
chr7 (21-126)||(13617699-13617804)
chr7 (59-174)||(16369574-16369689)
chr7 (109-171)||(44306444-44306506)
chr7 (108-173)||(16369660-16369725)
chr7 (109-173)||(16382430-16382494)
chr7 (109-171)||(39293003-39293065)
chr7 (30-94)||(15979209-15979273)
chr7 (108-156)||(16369697-16369745)
chr7 (129-173)||(21676235-21676279)
chr7 (89-122)||(15979303-15979336)
chr7 (109-174)||(21676178-21676243)
chr7 (109-174)||(28719336-28719401)
chr7 (146-174)||(4483683-4483711)
chr7 (146-174)||(28719410-28719438)
[»] chr8 (26 HSPs)
chr8 (18-171)||(25294890-25295043)
chr8 (18-171)||(25756910-25757063)
chr8 (18-173)||(45560310-45560465)
chr8 (47-173)||(11543433-11543559)
chr8 (47-173)||(22312588-22312714)
chr8 (30-174)||(3845250-3845392)
chr8 (27-174)||(25608975-25609111)
chr8 (21-174)||(20177079-20177233)
chr8 (21-174)||(20221806-20221960)
chr8 (109-171)||(20177205-20177267)
chr8 (109-171)||(20221932-20221994)
chr8 (18-118)||(7469137-7469238)
chr8 (129-174)||(19332802-19332847)
chr8 (109-173)||(19332819-19332883)
chr8 (109-172)||(25756872-25756935)
chr8 (109-174)||(16000921-16000986)
chr8 (65-102)||(19332756-19332793)
chr8 (129-173)||(19332876-19332920)
chr8 (129-173)||(24238464-24238508)
chr8 (129-173)||(25608939-25608983)
chr8 (139-174)||(16000958-16000993)
chr8 (64-115)||(22498526-22498577)
chr8 (105-154)||(3845360-3845409)
chr8 (67-124)||(18042772-18042830)
chr8 (109-174)||(11543395-11543460)
chr8 (105-153)||(11543379-11543427)
[»] scaffold0317 (2 HSPs)
scaffold0317 (18-174)||(14943-15099)
scaffold0317 (109-169)||(15071-15131)
[»] scaffold1204 (2 HSPs)
scaffold1204 (26-174)||(1323-1471)
scaffold1204 (129-171)||(1463-1505)
[»] chr3 (15 HSPs)
chr3 (18-173)||(11401494-11401649)
chr3 (18-171)||(8603542-8603695)
chr3 (26-174)||(17759543-17759695)
chr3 (26-174)||(19060863-19061015)
chr3 (18-168)||(5229206-5229356)
chr3 (18-173)||(38376904-38377059)
chr3 (25-118)||(25105174-25105267)
chr3 (18-118)||(43428742-43428843)
chr3 (129-173)||(17759687-17759731)
chr3 (129-173)||(19061007-19061051)
chr3 (18-118)||(18968979-18969080)
chr3 (73-161)||(11516746-11516834)
chr3 (136-174)||(11516772-11516810)
chr3 (134-174)||(17392297-17392337)
chr3 (134-174)||(38376983-38377023)
[»] chr6 (21 HSPs)
chr6 (69-174)||(11374005-11374110)
chr6 (65-174)||(29161586-29161695)
chr6 (18-173)||(23220620-23220774)
chr6 (51-173)||(16135202-16135324)
chr6 (82-171)||(25650019-25650108)
chr6 (18-152)||(17084450-17084584)
chr6 (104-171)||(22594749-22594816)
chr6 (109-173)||(29161667-29161731)
chr6 (130-173)||(21930816-21930859)
chr6 (129-173)||(29161761-29161805)
chr6 (109-174)||(23220582-23220647)
chr6 (109-173)||(11374082-11374146)
chr6 (142-174)||(22594750-22594782)
chr6 (18-77)||(31162105-31162164)
chr6 (105-151)||(4172885-4172931)
chr6 (105-151)||(4228494-4228540)
chr6 (18-118)||(22463317-22463418)
chr6 (129-174)||(29161724-29161769)
chr6 (111-155)||(11374121-11374165)
chr6 (146-174)||(23220656-23220684)
chr6 (107-155)||(26505689-26505737)
[»] scaffold0090 (5 HSPs)
scaffold0090 (18-173)||(1356-1511)
scaffold0090 (18-173)||(5736-5891)
scaffold0090 (110-174)||(35993-36056)
scaffold0090 (146-174)||(1447-1475)
scaffold0090 (146-174)||(5827-5855)
[»] scaffold0183 (2 HSPs)
scaffold0183 (27-174)||(9729-9877)
scaffold0183 (112-173)||(9693-9754)
[»] chr2 (19 HSPs)
chr2 (18-173)||(18534746-18534901)
chr2 (18-174)||(22331637-22331792)
chr2 (18-173)||(24561963-24562118)
chr2 (31-150)||(6093775-6093894)
chr2 (18-104)||(43641704-43641790)
chr2 (120-173)||(6093723-6093776)
chr2 (87-150)||(45618691-45618754)
chr2 (18-104)||(19434670-19434756)
chr2 (21-153)||(20272298-20272430)
chr2 (104-171)||(22331603-22331670)
chr2 (105-169)||(24840690-24840754)
chr2 (18-87)||(45618405-45618474)
chr2 (134-173)||(20272315-20272354)
chr2 (18-174)||(24840722-24840873)
chr2 (136-173)||(29113163-29113200)
chr2 (109-174)||(24562091-24562156)
chr2 (146-174)||(24562054-24562082)
chr2 (75-155)||(29113144-29113224)
chr2 (89-121)||(45619298-45619330)
[»] chr4 (17 HSPs)
chr4 (18-171)||(12134844-12134997)
chr4 (18-174)||(5371791-5371946)
chr4 (18-173)||(19558251-19558406)
chr4 (18-173)||(54364664-54364819)
chr4 (26-173)||(17376660-17376804)
chr4 (51-173)||(14570175-14570297)
chr4 (18-102)||(12733052-12733136)
chr4 (21-126)||(49070703-49070808)
chr4 (32-153)||(19082289-19082410)
chr4 (18-118)||(38763665-38763766)
chr4 (134-174)||(54364743-54364783)
chr4 (134-174)||(17376731-17376771)
chr4 (109-168)||(5371918-5371977)
chr4 (18-77)||(17213063-17213122)
chr4 (18-102)||(16226366-16226449)
chr4 (142-174)||(19558287-19558319)
chr4 (18-126)||(24237765-24237873)
[»] chr1 (10 HSPs)
chr1 (22-173)||(33396219-33396371)
chr1 (67-173)||(77184-77290)
chr1 (109-173)||(20821874-20821938)
chr1 (18-174)||(20821910-20822062)
chr1 (18-118)||(46144659-46144760)
chr1 (47-153)||(21224122-21224229)
chr1 (18-118)||(40437479-40437579)
chr1 (20-95)||(49998526-49998602)
chr1 (109-174)||(20821836-20821901)
chr1 (146-174)||(77226-77254)
[»] scaffold0231 (2 HSPs)
scaffold0231 (34-174)||(14075-14215)
scaffold0231 (129-170)||(14207-14248)
[»] scaffold0174 (3 HSPs)
scaffold0174 (47-174)||(21208-21335)
scaffold0174 (109-174)||(21307-21372)
scaffold0174 (109-170)||(21344-21405)
[»] scaffold0017 (1 HSPs)
scaffold0017 (18-174)||(11499-11656)
[»] scaffold0468 (1 HSPs)
scaffold0468 (47-117)||(12214-12284)
[»] scaffold0005 (1 HSPs)
scaffold0005 (51-173)||(247079-247201)
[»] scaffold0009 (4 HSPs)
scaffold0009 (111-174)||(255551-255614)
scaffold0009 (129-174)||(255643-255688)
scaffold0009 (109-169)||(255660-255720)
scaffold0009 (129-166)||(98348-98385)
[»] scaffold0057 (1 HSPs)
scaffold0057 (18-108)||(4839-4929)
[»] scaffold0601 (1 HSPs)
scaffold0601 (18-101)||(2197-2280)
[»] scaffold0013 (2 HSPs)
scaffold0013 (18-116)||(8322-8420)
scaffold0013 (110-166)||(8429-8485)
[»] scaffold0088 (1 HSPs)
scaffold0088 (21-126)||(44793-44900)
[»] scaffold0049 (1 HSPs)
scaffold0049 (18-94)||(34645-34720)
[»] scaffold0153 (1 HSPs)
scaffold0153 (18-113)||(755-850)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 14342859 - 14343015
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14342859 atcataatgtgttgtattttctccattaattgaattgtgagaaatggtatggagttgttgaacaatatgatatagttgatgttgaataatgcatatatgt 14342958  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14342959 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 14343015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 20455189 - 20455345
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| ||| ||||||||||| |||  | ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20455189 atcataatgtgttgtattttctcctttacttgaattgtgagaaactgaatggagttgttgaactatatgatatagttgatgttgattaatgcatatatgt 20455288  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    | ||||||   ||||||||||||||||||||||||||| ||||||||||||||||||    
T  20455289 tgattgattgtgatattgttggtgaatacatatatgttaattgattgtgatattgtt 20455345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 21108581 - 21108428
Alignment:
Q  20 cataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgtta 119  Q
    |||||||||||||||||| ||| ||| ||| ||||||| |||   ||||||||||||||||||||||||||||||||||||||||| | ||||||||||     
T  21108581 cataaggtgttgtattttctcctttacttggattgtgagaaagtatatggagttgttgaactatatgatatagttgatgttgaatattacatatatgttg 21108482  T
Q  120 attgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    ||||||   ||||||||||||||||||||||||||||||||| |||||||||||    
T  21108481 attgattgtgatattgttggtgaatacatatatgttgattgagtgtgatattgt 21108428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 11965024 - 11964872
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| ||| ||||||||||| |||| ||||| ||||||||||||| || |||||||||||||||| ||||||||||||||    
T  11965024 atcataatgtgttgtattttctcctttacttgaattgtgagaaattgtatgaagttgttgaactaaataatatagttgatgttgattaatgcatatatgt 11964925  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatat 170  Q
    | |||||    |||||||| |||||||||||||||||| ||||||||||||||    
T  11964924 tgattgagtgtgatattgtcggtgaatacatatatgttaattgattgtgatat 11964872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 20833202 - 20833309
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    |||||||| || |||||||| ||  ||| ||| ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20833202 atcataagatgatgtattttctct-ttacttgtattgtgagaaataatatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 20833300  T
Q  118 taattgatg 126  Q
    ||| |||||    
T  20833301 taagtgatg 20833309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 24226678 - 24226764
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaat 104  Q
    ||||||| ||||| || ||| ||| ||| ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  24226678 atcataatgtgttttactttctcctttacttgaattgtgagaaattgtatggagttgttgaactatatgatgtagttgatgttgaat 24226764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 23414204 - 23414099
Alignment:
Q  21 ataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaa 120  Q
    ||||||||||||||||| ||| ||| ||| | ||||| |||  ||||||||||||||| |||||| |||||||||||||||| ||||| |||||| | ||    
T  23414204 ataaggtgttgtattttctcctttacttggaatgtgagaaagtgtatggagttgttgagctatattatatagttgatgttgattaatgtatatatatcaa 23414105  T
Q  121 ttgatg 126  Q
    ||||||    
T  23414104 ttgatg 23414099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 33627605 - 33627686
Alignment:
Q  26 gtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataat 107  Q
    |||||||||||| ||| ||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||    
T  33627605 gtgttgtattttctcctttacttgtattatgaaaaattgtatggagttgttgaactatatgatatagttgaagttgattaat 33627686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 11764802 - 11764837
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattg 164  Q
    ||||||||||||||||||||||||||||||||||||    
T  11764802 gatattgttggtgaatacatatatgttgattgattg 11764837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 20455317 - 20455376
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgat 168  Q
    |||||||||||||||||   |||||||||||||||| |||||||||| | |||| |||||    
T  20455317 catatatgttaattgattgtgatattgttggtgaatgcatatatgttaagtgatggtgat 20455376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 14343051 - 14343085
Alignment:
Q  137 tggtgaatacatatatgttgattgattgtgatatt 171  Q
    ||||||||||||||||||| |||||||||||||||    
T  14343051 tggtgaatacatatatgttaattgattgtgatatt 14343085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 174
Target Start/End: Complemental strand, 21108494 - 21108464
Alignment:
Q  144 tacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||||||||||||||||    
T  21108494 tacatatatgttgattgattgtgatattgtt 21108464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 133; Significance: 2e-69; HSPs: 3)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 5216 - 5372
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5216 atcataatgtgttgtattttctccattaattgaattgtgagaaatggtatgaagttgttgaactatatgatatagttgatgttgaataatgtatatatgt 5315  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5316 taattgatgaggatattgttggtgaatacatatatgtggattgattgtgatattgtt 5372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 5377 - 5445
Alignment:
Q  105 aatgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||||||||| |||| |   ||||||||||||||||| ||||||||  |||||||||||||||||    
T  5377 aatgcatatatgttgattggttgtgatattgttggtgaataaatatatgtcaattgattgtgatattgt 5445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 5364 - 5409
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  5364 gatattgttgttgaatgcatatatgttgattggttgtgatattgtt 5409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 1e-64; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 21676050 - 21676206
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21676050 atcataatgtgttgtattttctcctttacttgaattgtgagaaattgtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 21676149  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  21676150 taattgatgaggatattgttggtgaatacatatatgttgattgattgcaatattgtt 21676206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 28719529 - 28719374
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||  ||| ||||||| ||| |||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  28719529 atcataatgtgttgtattttctcttttacttgaattttgagaaattgtatggagttgttgaactatatgatagagttgatgttgattaatgcatatatgt 28719430  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    | ||||||   ||||||||||||||||||||||||||| |||||||||||||||||    
T  28719429 tgattgattgtgatattgttggtgaatacatatatgttaattgattgtgatattgt 28719374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 45148570 - 45148461
Alignment:
Q  65 tatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattg 164  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  45148570 tatggagttgttgaactataagatataattgatgttgaatattgcatatatgttaattgatgaggatattgctggtgaatacatatatgttgattggttg 45148471  T
Q  165 tgatattgtt 174  Q
    ||||||||||    
T  45148470 tgatattgtt 45148461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 4483802 - 4483647
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    |||||||  |||||||||||  || ||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4483802 atcataatatgttgtattttcccctttatttgaattgtgagaaattgtatggagttgttgaactatatgatatagttgatgttgattaatgcatatatgt 4483703  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    | ||||||   |||||||||| |||||||||||||||| || |||||| |||||||    
T  4483702 tgattgattgtgatattgttgttgaatacatatatgttaatggattgtaatattgt 4483647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 8564726 - 8564868
Alignment:
Q  26 gtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgat 125  Q
    ||||||||| || ||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8564726 gtgttgtatgttctcctttacttgaattgtgagaaatcgtatggagttgttgaactatatgatatagttgatgttgattaatgcatatatgttaattgat 8564825  T
Q  126 gaggatattgttggtgaatacatatatgttgattgattgtgat 168  Q
       |||||||| ||||||| |||||||||| | |||| |||||    
T  8564826 tgtgatattgtcggtgaatgcatatatgttaagtgatggtgat 8564868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 16382619 - 16382466
Alignment:
Q  21 ataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaa 120  Q
    ||||||||||||||||| ||| ||| ||| ||| ||| |||   ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |    
T  16382619 ataaggtgttgtattttctcctttacttggattatgagaaagtatatggagttgttgaactatatgatatagttgatgttgaatattacatatatgttga 16382520  T
Q  121 ttgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |  ||   ||||||||||||||||||||||||||| ||||||||||||||||||    
T  16382519 tatattgtgatattgttggtgaatacatatatgtttattgattgtgatattgtt 16382466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 39292876 - 39293028
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||| | ||| |||  || ||||||| |||| ||||||||||||||||| ||||||| ||||| ||||||| |||||||| ||||     
T  39292876 atcataatgtgttgtattctctcctttacgtgtattgtgagaaattgtatggagttgttgaaccatatgatctagtt-atgttgattaatgcatgtatgc 39292974  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatatt 171  Q
    |||||||||  |||||||||||| ||||||||||||||||||||||||||||||    
T  39292975 taattgatggtgatattgttggtaaatacatatatgttgattgattgtgatatt 39293028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 46472992 - 46472886
Alignment:
Q  64 gtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattgatt 163  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||  ||||||||| |  ||||||||||||||||||||||    
T  46472992 gtatggagttgttgaactatatgatatagtttatgttgattaatgcatatattttaattgatggtgatattgtt-gaaaatacatatatgttgattgatt 46472894  T
Q  164 gtgatatt 171  Q
     |||||||    
T  46472893 atgatatt 46472886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 21539365 - 21539435
Alignment:
Q  52 ttgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaatt 122  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  21539365 ttgtgagaaattgtatggagttgttgaactatatgatatagttgatgttgattaatgcatacatgttaatt 21539435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 44306318 - 44306472
Alignment:
Q  21 ataaggtgttgtattttttccattaattgaa-ttgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgtta 119  Q
    ||||||||||||||||| ||| ||| ||||| |||||| ||||  ||||  ||||||||| ||||||||  ||| |||||||   ||| ||||||||||     
T  44306318 ataaggtgttgtattttctcctttacttgaaattgtgagaaataatatgatgttgttgaattatatgatgaagtcgatgttggtgaatacatatatgttg 44306417  T
Q  120 attgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    ||| ||    ||||| |||||| ||||||||||||||||||||||||||||||||    
T  44306418 attaattgttatattattggtggatacatatatgttgattgattgtgatattgtt 44306472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 13617804 - 13617699
Alignment:
Q  21 ataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaa 120  Q
    ||||||||||||||||| ||| ||| ||| | ||||| |||  ||||||||||||||| |||||| |||||||||||||||| ||||| |||||| | ||    
T  13617804 ataaggtgttgtattttctcctttacttggaatgtgagaaagtgtatggagttgttgagctatattatatagttgatgttgattaatgtatatatatcaa 13617705  T
Q  121 ttgatg 126  Q
    ||||||    
T  13617704 ttgatg 13617699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 174
Target Start/End: Original strand, 16369574 - 16369689
Alignment:
Q  59 aaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgat 158  Q
    |||||||| | |||||||||| |||||||  ||||||||||||   || |||||||| ||||||||||   ||||||||||||||  |||||||||| ||    
T  16369574 aaatggtaggaagttgttgaattatatgacttagttgatgttggtgaacgcatatatattaattgatggttatattgttggtgaaggcatatatgttaat 16369673  T
Q  159 tgattgtgatattgtt 174  Q
    |||| |||||||||||    
T  16369674 tgatggtgatattgtt 16369689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 44306444 - 44306506
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatatt 171  Q
    |||||||||| ||||||   |||||||||||| ||||||||||||||||||||||||||||||    
T  44306444 catatatgttgattgattgtgatattgttggtcaatacatatatgttgattgattgtgatatt 44306506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 16369660 - 16369725
Alignment:
Q  108 gcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||||||||||||||  |||||||||||||||  |||||||||| |||||| ||||||||||    
T  16369660 gcatatatgttaattgatggtgatattgttggtgaacgcatatatgttaattgatggtgatattgt 16369725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 16382494 - 16382430
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||||| ||||||   ||||||||||||| ||||||||||||| ||||| |||||||||||    
T  16382494 catatatgtttattgattgtgatattgttggtggatacatatatgttaattgagtgtgatattgt 16382430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 39293003 - 39293065
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatatt 171  Q
    |||||||||| ||||||   |||||| ||| |||||| |||||||||||||||||||||||||    
T  39293003 catatatgttgattgattgtgatatttttgatgaataaatatatgttgattgattgtgatatt 39293065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 15979209 - 15979273
Alignment:
Q  30 tgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagtt 94  Q
    |||||||| | | ||| ||| ||||||| |||| ||||| |||||||||||||||||||||||||    
T  15979209 tgtattttctactttacttggattgtgagaaattgtatgaagttgttgaactatatgatatagtt 15979273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 16369697 - 16369745
Alignment:
Q  108 gcatatatgttaattgatgaggatattgttggtgaatacatatatgttg 156  Q
    |||||||||||||||||||  |||||||| ||||||| |||||||||||    
T  16369697 gcatatatgttaattgatggtgatattgtcggtgaatgcatatatgttg 16369745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 21676235 - 21676279
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||    
T  21676235 gatattgttggtggatacatatatgtcaattgattgtgatattgt 21676279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 15979303 - 15979336
Alignment:
Q  89 atagttgatgttgaataatgcatatatgttaatt 122  Q
    |||||||||||||| |||||||||||||||||||    
T  15979303 atagttgatgttgagtaatgcatatatgttaatt 15979336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 21676178 - 21676243
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||| ||||||    ||||||||||||||| ||||||||||  ||| |||||||||||||    
T  21676178 catatatgttgattgattgcaatattgttggtgaatgcatatatgtttgttggttgtgatattgtt 21676243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 28719401 - 28719336
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||   |||||||| ||||||| |||||||||| | |||| ||||| |||||    
T  28719401 catatatgttaattgattgtgatattgtcggtgaatgcatatatgttaagtgatggtgattttgtt 28719336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 4483711 - 4483683
Alignment:
Q  146 catatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||||||||||||||    
T  4483711 catatatgttgattgattgtgatattgtt 4483683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 28719438 - 28719410
Alignment:
Q  146 catatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||||||||||||||    
T  28719438 catatatgttgattgattgtgatattgtt 28719410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 5e-58; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 25295043 - 25294890
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| ||| |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25295043 atcataatgtgttgtattttctcctttacttgacttgtgagaaattgtatggagttgttgaactatatgatatagttgatgttgattaatgcatatatgt 25294944  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatatt 171  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  25294943 taattgatggtgatattgttggtgaatacatatatgttgattgattgtgatatt 25294890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 25757063 - 25756910
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| ||| |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25757063 atcataatgtgttgtattttctcctttacttgacttgtgagaaattgtatggagttgttgaactatatgatatagttgatgttgattaatgcatatatgt 25756964  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatatt 171  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  25756963 taattgatggtgatattgttggtgaatacatatatgttgattgattgtgatatt 25756910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 45560310 - 45560465
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| ||| ||| ||||||| || | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45560310 atcataaagtgttgtattttctcctttacttggattgtgagaagttgtatggagttgttgaactatatgatatagttgatgttgattaatgcatatatgt 45560409  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |  |||||   ||||||||| |||||||||||||| || |||||||||||||||||    
T  45560410 tgtttgattgtgatattgtttgtgaatacatatattttaattgattgtgatattgt 45560465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 11543559 - 11543433
Alignment:
Q  47 ttgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatac 146  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||    |||||||||||||||||    
T  11543559 ttgaattgtgagaaatagtatggagttgttgaactatatgatatagttgatgttgattaatgcatatatgttggttgattgttatattgttggtgaatac 11543460  T
Q  147 atatatgttgattgattgtgatattgt 173  Q
    ||||||||| |||||||||||||||||    
T  11543459 atatatgttaattgattgtgatattgt 11543433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 22312714 - 22312588
Alignment:
Q  47 ttgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatac 146  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||   ||||||||||||||||||    
T  22312714 ttgaattgtgagaaatagtatggagttgttgaactatatgatatagttgatgttgattaatgcatatatgttggttgattgtgatattgttggtgaatac 22312615  T
Q  147 atatatgttgattgattgtgatattgt 173  Q
    ||||||||  ||||||||| |||||||    
T  22312614 atatatgtcaattgattgtaatattgt 22312588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 30 - 174
Target Start/End: Original strand, 3845250 - 3845392
Alignment:
Q  30 tgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgagg 129  Q
    |||||||| ||| ||| ||| ||||||| |||| ||||||||||||||||||||||||||||||||||  ||| || |||||||||||||| |||||  |    
T  3845250 tgtattttctcctttacttggattgtgagaaattgtatggagttgttgaactatatgatatagttgataatgattagtgcatatatgttaagtgatggtg 3845349  T
Q  130 atattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    ||||||  ||||||| |||||||||  ||||||  ||||||||||    
T  3845350 atattg--ggtgaatgcatatatgtcaattgatgttgatattgtt 3845392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 25609111 - 25608975
Alignment:
Q  27 tgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatg 126  Q
    ||||||||||| ||| ||| ||| ||||||| |||| |||||  ||||||||||||||||||||||||||||| || |||| |||||||||| ||||       
T  25609111 tgttgtattttctcctttacttggattgtgagaaatagtatgatgttgttgaactatatgatatagttgatgtggattaatacatatatgttgattg--- 25609015  T
Q  127 aggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
            |||||||||||||||||||||||||| |||||||||||||    
T  25609014 --------gttggtgaatacatatatgttgattggttgtgatattgtt 25608975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 20177079 - 20177233
Alignment:
Q  21 ataaggtgttgtattttttccattaattgaa-ttgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgtta 119  Q
    ||||||||||||||||| ||| ||| ||||| |||||| ||||  ||||  ||||||||| ||||||||  ||| |||||||   ||| ||||||||||     
T  20177079 ataaggtgttgtattttctcctttacttgaaattgtgagaaataatatgatgttgttgaattatatgatgaagtcgatgttggtgaatacatatatgttg 20177178  T
Q  120 attgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    ||| ||    ||||| |||||| ||||||||||||||||||||||||||||||||    
T  20177179 attaattgttatattattggtggatacatatatgttgattgattgtgatattgtt 20177233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 20221806 - 20221960
Alignment:
Q  21 ataaggtgttgtattttttccattaattgaa-ttgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgtta 119  Q
    ||||||||||||||||| ||| ||| ||||| |||||| ||||  ||||  ||||||||| ||||||||  ||| |||||||   ||| ||||||||||     
T  20221806 ataaggtgttgtattttctcctttacttgaaattgtgagaaataatatgatgttgttgaattatatgatgaagtcgatgttggtgaatacatatatgttg 20221905  T
Q  120 attgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    ||| ||    ||||| |||||| ||||||||||||||||||||||||||||||||    
T  20221906 attaattgttatattattggtggatacatatatgttgattgattgtgatattgtt 20221960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 20177205 - 20177267
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatatt 171  Q
    |||||||||| ||||||   |||||||||||| ||||||||||||||||||||||||||||||    
T  20177205 catatatgttgattgattgtgatattgttggtcaatacatatatgttgattgattgtgatatt 20177267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 20221932 - 20221994
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatatt 171  Q
    |||||||||| ||||||   |||||||||||| ||||||||||||||||||||||||||||||    
T  20221932 catatatgttgattgattgtgatattgttggtcaatacatatatgttgattgattgtgatatt 20221994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 7469238 - 7469137
Alignment:
Q  18 atcataaggtgttgtattttt-tccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatg 116  Q
    ||||||||||||||||||||  ||| ||| ||| ||| ||| || | ||||||||||||||||||||||||||||||||| | ||| ||||| ||| |||    
T  7469238 atcataaggtgttgtattttcctcctttacttgtattatgagaagttgtatggagttgttgaactatatgatatagttgaagctgattaatgaatacatg 7469139  T
Q  117 tt 118  Q
    ||    
T  7469138 tt 7469137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 19332802 - 19332847
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  19332802 gatattgttggtgaatacatatatgttgattgattgagatattgtt 19332847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 19332819 - 19332883
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||||| ||||||   |||||||||||| ||||||||||||||||||| ||||||||||||    
T  19332819 catatatgttgattgattgagatattgttggtaaatacatatatgttgattggttgtgatattgt 19332883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 25756935 - 25756872
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattg 172  Q
    |||||||||| ||||||   |||||| |||||||||||||||||||| ||||||||||||||||    
T  25756935 catatatgttgattgattgtgatatttttggtgaatacatatatgttaattgattgtgatattg 25756872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 16000986 - 16000921
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||| ||||||   ||||||||||||||||||||||||||||| |||||| ||| |||||    
T  16000986 catatatgttgattgattgtgatattgttggtgaatacatatatgttgagtgattgagatgttgtt 16000921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 19332756 - 19332793
Alignment:
Q  65 tatggagttgttgaactatatgatatagttgatgttga 102  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19332756 tatggagttgttgaactatatgatatagttgatgttga 19332793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 19332876 - 19332920
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||| |||||||||||||||||| |||||||||||||||||    
T  19332876 gatattgtgggtgaatacatatatgttaattgattgtgatattgt 19332920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 24238508 - 24238464
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  24238508 gatattgttggtgaatacatataagttaattgattgtgatattgt 24238464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 25608983 - 25608939
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  25608983 gatattgttggtgaatacatatgtgttgattggttgtgatattgt 25608939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 16000993 - 16000958
Alignment:
Q  139 gtgaatacatatatgttgattgattgtgatattgtt 174  Q
    ||||||||||||||||||||||||||||||||||||    
T  16000993 gtgaatacatatatgttgattgattgtgatattgtt 16000958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 22498526 - 22498577
Alignment:
Q  64 gtatggagttgttgaactatatgatatagttgatgttgaataatgcatatat 115  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||| ||||||    
T  22498526 gtatggagtggttgaactatattatatagttgatgttgattaatgtatatat 22498577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 3845360 - 3845409
Alignment:
Q  105 aatgcatatatgttaattgatgaggatattgttggtgaatacatatatgt 154  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||||||||    
T  3845360 aatgcatatatgtcaattgatgttgatattgttggtgaatgcatatatgt 3845409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 18042772 - 18042830
Alignment:
Q  67 tggagttgttgaactatatgatatagttgatgttgaa-taatgcatatatgttaattga 124  Q
    |||||| |||||||||||| ||||||||||||||||| ||||| |||||| | ||||||    
T  18042772 tggagtggttgaactatattatatagttgatgttgaattaatgtatatatatcaattga 18042830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 11543460 - 11543395
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||   |||||||| ||||||| |||||||||| | |||| ||||| |||||    
T  11543460 catatatgttaattgattgtgatattgtcggtgaatgcatatatgttaagtgatggtgattttgtt 11543395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 11543427 - 11543379
Alignment:
Q  105 aatgcatatatgttaattgatgaggatattgttggtgaatacatatatg 153  Q
    |||||||||||||||| |||||  ||| |||||||||| ||||||||||    
T  11543427 aatgcatatatgttaagtgatggtgattttgttggtgattacatatatg 11543379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 14943 - 15099
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| ||| ||||||||||| ||||  ||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  14943 atcataatgtgttgtattttctcctttacttgaattgtgagaaattatatggagttgttgaactatatgatatagttgatgtcgattaatgcatatatgt 15042  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  15043 taattgatggtgatattgttggtgaatacatatatgttgattgattgtgatattgtt 15099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 15071 - 15131
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgata 169  Q
    |||||||||| ||||||   ||||||||||||||||||||||||||| |||||||||||||    
T  15071 catatatgttgattgattgtgatattgttggtgaatacatatatgttaattgattgtgata 15131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 1323 - 1471
Alignment:
Q  26 gtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgat 125  Q
    |||||||||||| ||| ||| ||| ||||||| |||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1323 gtgttgtattttctcctttacttggattgtgagaaagtatatggagttgttgaactatatgatatagttgatgttgaatattgcatatatgttaattgat 1422  T
Q  126 gaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    ||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  1423 gagaatattgttggtgaatacatatatgttgattggttgtgatattgtt 1471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 1463 - 1505
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtgatatt 171  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  1463 gatattgttggtgaatacatatatgttaattgattgtgatatt 1505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 11401649 - 11401494
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| ||| ||| |||| ||| ||| ||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||| ||||||||||||||    
T  11401649 atcataatgtgctgtgttttctcctttacttgaattgtgagaaattgtatgaagttgttgaactatatgataaagttgatgttgattaatgcatatatgt 11401550  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  11401549 taattgatggtgatattgttggtgaatacatatatgttgattgattgtgatattgt 11401494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 8603695 - 8603542
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    |||||||||||||||||||| ||| ||| ||| ||||||| |||| |||||  ||||||||||||||||||||||||||||||||||||||||||| |||    
T  8603695 atcataaggtgttgtattttctcctttacttggattgtgagaaatagtatgatgttgttgaactatatgatatagttgatgttgaataatgcatatgtgt 8603596  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatatt 171  Q
    |||||||| |||||||||||||||||||||||||| |  |||||||||||||||    
T  8603595 taattgataaggatattgttggtgaatacatatatatcaattgattgtgatatt 8603542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 17759543 - 17759695
Alignment:
Q  26 gtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatg----ttgaataatgcatatatgttaat 121  Q
    |||||||||||| ||  ||||||| ||||||| |||   |||||||||||| || ||||||||||||||||||    ||||||| |||||||||||||||    
T  17759543 gtgttgtattttctcttttaattggattgtgagaaagtatatggagttgttaaattatatgatatagttgatgcatgttgaatattgcatatatgttaat 17759642  T
Q  122 tgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  17759643 tgatgaggatcttgttggtgaatacatatatgttgattggttgtgatattgtt 17759695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 19060863 - 19061015
Alignment:
Q  26 gtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatg----ttgaataatgcatatatgttaat 121  Q
    |||||||||||| ||  ||||||| ||||||| |||   |||||||||||| || ||||||||||||||||||    ||||||| |||||||||||||||    
T  19060863 gtgttgtattttctcttttaattggattgtgagaaagtatatggagttgttaaattatatgatatagttgatgcatgttgaatattgcatatatgttaat 19060962  T
Q  122 tgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  19060963 tgatgaggatcttgttggtgaatacatatatgttgattggttgtgatattgtt 19061015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 5229206 - 5229356
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| ||| ||||||||||| |||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||    
T  5229206 atcataatgtgttgtattttctcctttacttgaattgtgagaaatcgtatggagttgttgaacaatatgatatagttgatgtcgattaatgcatatatgt 5229305  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgat 168  Q
    | ||||||   |||||||| ||||||| |||||||||| | |||| |||||    
T  5229306 tgattgattgtgatattgtcggtgaatgcatatatgttaagtgatggtgat 5229356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 38376904 - 38377059
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||||||||| |||||| ||| ||| ||| ||| ||| ||||  ||||  |||||||||  |||||||| ||| |||||||   |||   |||||||    
T  38376904 atcataaggtgttatattttctcctttacttggattttgagaaataatatgatgttgttgaatcatatgataaagtcgatgttggtgaatatgtatatgt 38377003  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    | |||||| | |||||||||||||||||||| |||||| |||||||||||||||||    
T  38377004 tgattgattatgatattgttggtgaatacatgtatgttaattgattgtgatattgt 38377059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 25105174 - 25105267
Alignment:
Q  25 ggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgtt 118  Q
    ||||||||||||| ||| ||| ||||||||||  |||| ||||||||||||||||||| ||||||||||||| ||||| ||||| ||| |||||    
T  25105174 ggtgttgtattttctcctttacttgaattgtgggaaattgtatggagttgttgaactaaatgatatagttgaagttgattaatgaatacatgtt 25105267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 43428742 - 43428843
Alignment:
Q  18 atcataaggtgttgtattttt-tccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatg 116  Q
    |||||||||| |||||||||  || |||| ||| ||| ||| |||| |||||||||||||||||||||||||||||| || ||||| ||||| ||| |||    
T  43428742 atcataaggtattgtattttcctctattacttgtattatgagaaattgtatggagttgttgaactatatgatatagtggaagttgattaatgaatacatg 43428841  T
Q  117 tt 118  Q
    ||    
T  43428842 tt 43428843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 17759687 - 17759731
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  17759687 gatattgttggtgaatacatatatgttcattgattgtgatattgt 17759731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 19061007 - 19061051
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  19061007 gatattgttggtgaatacatatatgttcattgattgtgatattgt 19061051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 18969080 - 18968979
Alignment:
Q  18 atcataaggtgttgtattttt-tccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatg 116  Q
    ||||||||||||||||||||  ||| ||| ||| ||| ||| || | | |||||| |||||||||||||||||||||||| || || ||||| ||| |||    
T  18969080 atcataaggtgttgtattttcctcctttacttgtattatgagaagttgaatggagctgttgaactatatgatatagttgaagtggattaatgaatacatg 18968981  T
Q  117 tt 118  Q
    ||    
T  18968980 tt 18968979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 11516746 - 11516834
Alignment:
Q  73 tgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattga 161  Q
    ||||||||||| ||| | ||||||| |||   ||| |||||||||| ||||||   ||| ||||||||||||||||||||||| |||||    
T  11516746 tgttgaactatgtgaaaaagttgatattggtgaatacatatatgttgattgattgagatgttgttggtgaatacatatatgttaattga 11516834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 11516772 - 11516810
Alignment:
Q  136 ttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  11516772 ttggtgaatacatatatgttgattgattgagatgttgtt 11516810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 17392337 - 17392297
Alignment:
Q  134 tgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  17392337 tgttagtgaatacatatatgttgatttattgtgatgttgtt 17392297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 38376983 - 38377023
Alignment:
Q  134 tgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    ||||||||||||  |||||||||||||||| ||||||||||    
T  38376983 tgttggtgaatatgtatatgttgattgattatgatattgtt 38377023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 7e-51; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 11374005 - 11374110
Alignment:
Q  69 gagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgat 168  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11374005 gagttgttgaactatatgatatagttgatgttgaatattgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgat 11374104  T
Q  169 attgtt 174  Q
    ||||||    
T  11374105 attgtt 11374110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 29161586 - 29161695
Alignment:
Q  65 tatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattg 164  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29161586 tatggagttgtcgaactatatgatatagttgatgttgaatattgcatatatgttaattgatgatgatattgttggtgaatacatatatgttgattgattg 29161685  T
Q  165 tgatattgtt 174  Q
    ||||||||||    
T  29161686 tgatattgtt 29161695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 23220774 - 23220620
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||  ||||| ||| ||| ||||||||||| ||||  |||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23220774 atcataatgtgtttcattttctcctttacttgaattgtgagaaattatatg-agttgttgaactatatgatatagttgatgttgattaatgcatatatgt 23220676  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    | ||||||   ||||||||||||||||||||||||||| ||||||| |||||||||    
T  23220675 tgattgattgtgatattgttggtgaatacatatatgttaattgattatgatattgt 23220620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 173
Target Start/End: Complemental strand, 16135324 - 16135202
Alignment:
Q  51 attgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatacatat 150  Q
    ||||||| |||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||    ||||||||||||||||||||||    
T  16135324 attgtgagaaattgtatggagttattgaactatatgatatagttgatgttgattaatgcatatatgttgattgactgtgatattgttggtgaatacatat 16135225  T
Q  151 atgttgattgattgtgatattgt 173  Q
    ||||| |||||||||||||||||    
T  16135224 atgttaattgattgtgatattgt 16135202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 25650108 - 25650019
Alignment:
Q  82 atatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatatt 171  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25650108 atatgatgtagttgatgttgaatagtgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgcgatatt 25650019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 17084450 - 17084584
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||  ||| ||| ||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  17084450 atcataatgtgttgtattttctcatttacttgtattgtgagaaattgtatggagttgttgaactatatgatatagtttatgttgattaatgcatatatgt 17084549  T
Q  118 taattgatgaggatattgttggtgaatacatatat 152  Q
    | ||||||   |||| | |||||||||| ||||||    
T  17084550 tgattgattgtgatactattggtgaatatatatat 17084584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 22594749 - 22594816
Alignment:
Q  104 taatgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatatt 171  Q
    |||| |||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  22594749 taatacatatatgttgattgattgtgatattgttggtgaatacatatatgttgattgattgtgatatt 22594816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 29161667 - 29161731
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||||| ||||||   |||||||||||||||||||||||||||||| ||||| ||||||||    
T  29161667 catatatgttgattgattgtgatattgttggtgaatacatatatgttgatggattgagatattgt 29161731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 21930859 - 21930816
Alignment:
Q  130 atattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  21930859 atattgttggtgaatacatatatgttaattgattgtgatattgt 21930816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 29161761 - 29161805
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||    
T  29161761 gatactgttggtgaatacatatatgttgattgattgggatattgt 29161805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 23220647 - 23220582
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    ||||||||||||||||| | |||||||| ||||||| |||||||||| | |||| ||||| |||||    
T  23220647 catatatgttaattgattatgatattgtcggtgaatgcatatatgttaagtgatggtgattttgtt 23220582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 11374082 - 11374146
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||||| ||||||   |||||||||||||||||  |||||||| |||||| ||||||||||    
T  11374082 catatatgttgattgattgtgatattgttggtgaatatgtatatgttaattgatggtgatattgt 11374146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 22594750 - 22594782
Alignment:
Q  142 aatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||||||||||||||||||    
T  22594750 aatacatatatgttgattgattgtgatattgtt 22594782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 31162105 - 31162164
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttg 77  Q
    |||||||||||||||||||| ||| ||| ||||||||||| |||  ||||| ||||||||    
T  31162105 atcataaggtgttgtattttctcctttacttgaattgtgagaaactgtatgaagttgttg 31162164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 4172885 - 4172931
Alignment:
Q  105 aatgcatatatgttaattgatgaggatattgttggtgaatacatata 151  Q
    |||||||||||||||| |||||  |||||||||||||||| ||||||    
T  4172885 aatgcatatatgttaaatgatggtgatattgttggtgaatgcatata 4172931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 4228494 - 4228540
Alignment:
Q  105 aatgcatatatgttaattgatgaggatattgttggtgaatacatata 151  Q
    |||||||||||||||| |||||  |||||||||||||||| ||||||    
T  4228494 aatgcatatatgttaaatgatggtgatattgttggtgaatgcatata 4228540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 22463317 - 22463418
Alignment:
Q  18 atcataaggtgttgtattttt-tccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatg 116  Q
    ||||||||||||||||||||  ||| ||| ||| ||||||| |||| ||  | || | |||||||||| ||||||||||| ||||| ||||| ||| |||    
T  22463317 atcataaggtgttgtattttcctcctttacttggattgtgagaaattgtgcgaaggttttgaactataggatatagttgaagttgattaatgaatacatg 22463416  T
Q  117 tt 118  Q
    ||    
T  22463417 tt 22463418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 29161724 - 29161769
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||| |||||||| |||||||||||||| |||||||| ||||    
T  29161724 gatattgtcggtgaatatatatatgttgattggttgtgatactgtt 29161769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 11374121 - 11374165
Alignment:
Q  111 tatatgttaattgatgaggatattgttggtgaatacatatatgtt 155  Q
    ||||||||||||||||  |||||||| ||||||| ||||||||||    
T  11374121 tatatgttaattgatggtgatattgtcggtgaatgcatatatgtt 11374165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 23220684 - 23220656
Alignment:
Q  146 catatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||||||||||||||    
T  23220684 catatatgttgattgattgtgatattgtt 23220656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 26505737 - 26505689
Alignment:
Q  107 tgcatatatgttaattgatgaggatattgttggtgaatacatatatgtt 155  Q
    |||||||||||||||| |||  |||||||||||||||| || |||||||    
T  26505737 tgcatatatgttaattaatggtgatattgttggtgaatccacatatgtt 26505689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 1356 - 1511
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  1356 atcataatgtgttgtattttctcctttacttgaattgtgagaaattgtatggagttgttgaactatatgatatagttgacgttgattaatgcatatatgt 1455  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    | ||||||   ||||||||||||||||||||||||| | |||||||||||||||||    
T  1456 tgattgattgtgatattgttggtgaatacatatatgctaattgattgtgatattgt 1511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 5736 - 5891
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  5736 atcataatgtgttgtattttctcctttacttgaattgtgagaaattgtatggagttgttgaactatatgatatagttgacgttgattaatgcatatatgt 5835  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    | ||||||   ||||||||||||||||||||||||| | |||||||||||||||||    
T  5836 tgattgattgtgatattgttggtgaatacatatatgctaattgattgtgatattgt 5891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 35993 - 36056
Alignment:
Q  110 atatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    ||||||||| ||||||   ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  35993 atatatgttgattgattgagatattgttagtgaatacatatatgttga-tgattgtgatattgtt 36056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 1447 - 1475
Alignment:
Q  146 catatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||||||||||||||    
T  1447 catatatgttgattgattgtgatattgtt 1475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 5827 - 5855
Alignment:
Q  146 catatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||||||||||||||    
T  5827 catatatgttgattgattgtgatattgtt 5855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 9877 - 9729
Alignment:
Q  27 tgttgtattttttccattaattgaattgtga-aaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgat 125  Q
    ||||||||||| ||  ||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  9877 tgttgtattttctcttttacttgaattgtgagaaaattgtatggagttgttgaactatatgatatagttgatgttgattaatgcatatatgataattgat 9778  T
Q  126 gaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |  ||||||||||||||||| | ||||||||||||||||||||||||||    
T  9777 ggtgatattgttggtgaatatagatatgttgattgattgtgatattgtt 9729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 9754 - 9693
Alignment:
Q  112 atatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    ||||||| ||||||   |||||||||||| |||||||||||||| ||||||||| |||||||    
T  9754 atatgttgattgattgtgatattgttggtcaatacatatatgttaattgattgtcatattgt 9693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 18534901 - 18534746
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| ||| ||||||||||| ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18534901 atcataatgtgttgtattttctcctttacttgaattgtgagaaattatatggagttgttgaactatatgatatagttgatgttgattaatgcatatatgt 18534802  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    | ||||||   |||||| ||| |||||||||||||||| |||||||||||||||||    
T  18534801 tgattgattgtgatattcttgatgaatacatatatgttaattgattgtgatattgt 18534746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 22331792 - 22331637
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| ||||||||| || ||| ||| ||| ||||||| |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |    
T  22331792 atcataatgtgttgtatcttctcctttacttgtattgtgagaaattgtatggagttgttgaactatatgatatagtttatgttgattaatgcatatatat 22331693  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||  |||||||||||| |||||||||||||||||||||||| ||||||||    
T  22331692 taattgatggtgatattgttggt-aatacatatatgttgattgattgtaatattgtt 22331637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 24561963 - 24562118
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    |||||||||||||||||||| ||| ||| ||| ||||||| |||| |||||  ||||||||| ||||||||| ||| |||||||| ||||||||||||||    
T  24561963 atcataaggtgttgtattttctcctttacttggattgtgagaaatagtatgatgttgttgaattatatgataaagtcgatgttgattaatgcatatatgt 24562062  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    | ||||||   ||||||||||||||||||||||||||| ||||||| |||||||||    
T  24562063 tgattgattgtgatattgttggtgaatacatatatgttaattgattttgatattgt 24562118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 31 - 150
Target Start/End: Complemental strand, 6093894 - 6093775
Alignment:
Q  31 gtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgagga 130  Q
    ||||||| ||| ||| ||| ||||||| |||   ||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  6093894 gtattttctcctttacttggattgtgagaaagtatatggagttgttgaactatatgatatagttattgttgaatattgcatatatgttaattgatgagga 6093795  T
Q  131 tattgttggtgaatacatat 150  Q
    ||||||||||||||||||||    
T  6093794 tattgttggtgaatacatat 6093775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 43641790 - 43641704
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaat 104  Q
    ||||||| |||||||||||| ||| ||| ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  43641790 atcataatgtgttgtattttctcctttacttgaattgtgagaaattgtatggagttgttgaactatatgatgtagttgatgttgaat 43641704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 6093776 - 6093723
Alignment:
Q  120 attgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6093776 attgatgaggatattgttggtgaatacatatatgctgattgattgtgatattgt 6093723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 45618691 - 45618754
Alignment:
Q  87 atatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatacatat 150  Q
    |||||||||||||||| |||||||||||||||||||||||  |||||||||||||||| |||||    
T  45618691 atatagttgatgttgattaatgcatatatgttaattgatggtgatattgttggtgaatgcatat 45618754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 19434670 - 19434756
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaat 104  Q
    ||||||| || ||||||||| ||| ||| ||||||||||| |||| ||| |||||| |||||||||||||| |||||||||||||||    
T  19434670 atcataatgtattgtattttctcctttacttgaattgtgagaaattgtaaggagtttttgaactatatgatgtagttgatgttgaat 19434756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 20272430 - 20272298
Alignment:
Q  21 ataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaa 120  Q
    |||| |||||||||||| ||| ||| ||| ||||||| |||| |||||  ||| ||||| ||||||||| ||| |||||||   ||| ||||||||||||    
T  20272430 ataatgtgttgtattttctcctttacttggattgtgagaaattgtatgatgttattgaattatatgataaagtcgatgttggtgaatacatatatgttaa 20272331  T
Q  121 ttgatgaggatattgttggtgaatacatatatg 153  Q
    |||||   |||||||| ||||||| ||||||||    
T  20272330 ttgattgtgatattgtcggtgaatgcatatatg 20272298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 22331670 - 22331603
Alignment:
Q  104 taatgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatatt 171  Q
    |||| |||||||||| ||||||    ||||||||||||||||||||||||||||||||||||||||||    
T  22331670 taatacatatatgttgattgattgtaatattgttggtgaatacatatatgttgattgattgtgatatt 22331603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 24840754 - 24840690
Alignment:
Q  105 aatgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgata 169  Q
    |||||||||||||| ||||||   ||||||||||||||| ||||||||||| |||||||||||||    
T  24840754 aatgcatatatgttgattgattgagatattgttggtgaaaacatatatgttaattgattgtgata 24840690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 45618474 - 45618405
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatga 87  Q
    ||||||| |||||||||||| ||  ||| ||||||||||| |||| ||||| ||||||||||||||||||    
T  45618474 atcataatgtgttgtattttctcttttacttgaattgtgagaaattgtatgaagttgttgaactatatga 45618405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 20272354 - 20272315
Alignment:
Q  134 tgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  20272354 tgttggtgaatacatatatgttaattgattgtgatattgt 20272315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 24840873 - 24840722
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| | | ||||||||||| ||||  ||||  ||||||||| ||||||||| ||| |||||||   |||| ||||        
T  24840873 atcataatgtgttgtattttctcc-tcacttgaattgtgagaaataatatgatgttgttgaattatatgataaagtcgatgttggtgaatgtatat---- 24840779  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    | ||||||   ||||| ||| |||||| ||||||||||||||||||| |||||||||    
T  24840778 tgattgattgtgatatggtttgtgaatgcatatatgttgattgattgagatattgtt 24840722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 29113200 - 29113163
Alignment:
Q  136 ttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||||||||||||||| |||||||||||||||||    
T  29113200 ttggtgaatacatatatgttaattgattgtgatattgt 29113163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 24562091 - 24562156
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||   |||||||| ||||||| |||||||||| | |||| ||||| |||||    
T  24562091 catatatgttaattgattttgatattgtcggtgaatgcatatatgttaagtgatggtgattttgtt 24562156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 24562054 - 24562082
Alignment:
Q  146 catatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||||||||||||||    
T  24562054 catatatgttgattgattgtgatattgtt 24562082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 29113224 - 29113144
Alignment:
Q  75 ttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatacatatatgtt 155  Q
    ||||| ||||||||  ||||||| |||   ||| |||||||||||||||||   |||||||| ||||||| ||||||||||    
T  29113224 ttgaattatatgatgaagttgatattggtgaatacatatatgttaattgattgtgatattgtcggtgaatgcatatatgtt 29113144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 45619298 - 45619330
Alignment:
Q  89 atagttgatgttgaataatgcatatatgttaat 121  Q
    |||||||||||||| ||||||||||||||||||    
T  45619298 atagttgatgttgagtaatgcatatatgttaat 45619330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 4e-46; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 12134844 - 12134997
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||  ||| ||| ||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12134844 atcataaagtgttgtattttctcttttacttggattgtgagaaagtatatggagttgttgaactatatgatatagttgatgttgaataatgcatctatgt 12134943  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatatt 171  Q
    |||||||||| |||||| ||||||||||||||||||||||||| || |||||||    
T  12134944 taattgatgaagatattattggtgaatacatatatgttgattggttatgatatt 12134997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 5371791 - 5371946
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| ||   |||||||||| |||  ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  5371791 atcataatgtgttgtattttctcctttgcctgaattgtgagaaactgtatggagttgttga-ctatatgatatagttgatgttgattaatgcatatatgt 5371889  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    | ||||||   ||||||||||||||||||||||||||| ||||||||||||||||||    
T  5371890 tgattgattgtgatattgttggtgaatacatatatgttaattgattgtgatattgtt 5371946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 19558406 - 19558251
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||||||||||| ||| ||| ||||||||||| |||| |||| |||||||||||| ||||||||||||||||||||| |||| ||||| |||    
T  19558406 atcataatgtgttgtattttctcctttacttgaattgtgagaaattgtatcgagttgttgaaccatatgatatagttgatgttgattaatacatatctgt 19558307  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    | ||||||   ||||||||||||||||||||||||||| || |||||| |||||||    
T  19558306 tgattgattgtgatattgttggtgaatacatatatgttaatggattgttatattgt 19558251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 54364664 - 54364819
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    |||||||||||||||||||| ||| ||| ||| ||||||| |||| |||||  ||||||||| ||||||||| ||| |||||||   ||| |||||||||    
T  54364664 atcataaggtgttgtattttctcctttacttggattgtgagaaatagtatgatgttgttgaattatatgataaagtcgatgttggtgaatacatatatgt 54364763  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    | ||| ||   ||||||||||||||||||||||||||| |||||||||||||||||    
T  54364764 tgatttattgtgatattgttggtgaatacatatatgttaattgattgtgatattgt 54364819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 17376660 - 17376804
Alignment:
Q  26 gtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgat 125  Q
    |||||||||||| ||| ||| ||||||||||| ||||  ||||| |||||| || |||||||| ||||||||||||  ||||||||||||||| ||||||    
T  17376660 gtgttgtattttctcctttacttgaattgtgagaaattatatggggttgttaaattatatgatttagttgatgttggttaatgcatatatgttgattgat 17376759  T
Q  126 gaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
       |||||||||||||||||||||||   |||||||||||||||||||    
T  17376760 tgtgatattgttggtgaatacatata---tgattgattgtgatattgt 17376804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 173
Target Start/End: Complemental strand, 14570297 - 14570175
Alignment:
Q  51 attgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatacatat 150  Q
    ||||||| |||| |||||  ||||||||| | ||||||  ||||||| |||   ||| |||||||||| ||||||   ||||| ||||||||||||||||    
T  14570297 attgtgagaaatagtatgatgttgttgaattttatgatgaagttgatattggtgaatacatatatgttgattgatagtgatatggttggtgaatacatat 14570198  T
Q  151 atgttgattgattgtgatattgt 173  Q
    ||||| |||||||||||||||||    
T  14570197 atgttaattgattgtgatattgt 14570175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 12733136 - 12733052
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttga 102  Q
    |||||||||||||||||||| ||| ||| ||| ||||||| |||||||  | ||||||||||||||| ||||||||||| |||||    
T  12733136 atcataaggtgttgtattttctcctttacttgtattgtgagaaatggtgcgaagttgttgaactataggatatagttgaagttga 12733052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 49070808 - 49070703
Alignment:
Q  21 ataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaa 120  Q
    ||||||||||||||| | ||| ||| ||| ||||||| |||   |||||||||||||| |||||| |||||||||||||||| ||||| || ||| | ||    
T  49070808 ataaggtgttgtattctctcctttacttggattgtgagaaagtatatggagttgttgagctatattatatagttgatgttgattaatgtatgtatatcaa 49070709  T
Q  121 ttgatg 126  Q
    ||||||    
T  49070708 ttgatg 49070703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 19082289 - 19082410
Alignment:
Q  32 tattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggat 131  Q
    |||||| ||| ||| ||||||||| | |||| | ||| |||| ||||| |||||||| |||| |||||||   |||| |||||| ||||||||||  |||    
T  19082289 tattttctcctttacttgaattgtaagaaattgcatgaagttattgaattatatgatgtagtcgatgttggtgaatgtatatatattaattgatggtgat 19082388  T
Q  132 attgttggtgaatacatatatg 153  Q
    |||||||||||||  |||||||    
T  19082389 attgttggtgaatgtatatatg 19082410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 38763766 - 38763665
Alignment:
Q  18 atcataaggtgttgtattttt-tccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatg 116  Q
    ||||| ||||||||||||||  ||| ||| ||| ||| |||||| | ||||| ||||||||||||||||||||||||||| || || ||||| ||| |||    
T  38763766 atcattaggtgttgtattttcctcctttacttgtattatgaaaagttgtatgaagttgttgaactatatgatatagttgaagtggattaatgaatacatg 38763667  T
Q  117 tt 118  Q
    ||    
T  38763666 tt 38763665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 54364743 - 54364783
Alignment:
Q  134 tgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  54364743 tgttggtgaatacatatatgttgatttattgtgatattgtt 54364783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 17376731 - 17376771
Alignment:
Q  134 tgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  17376731 tgttggttaatgcatatatgttgattgattgtgatattgtt 17376771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 5371918 - 5371977
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgat 168  Q
    |||||||||||||||||   |||||||||||||||| |||||||||| | |||| |||||    
T  5371918 catatatgttaattgattgtgatattgttggtgaatgcatatatgttaagtgatggtgat 5371977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 17213063 - 17213122
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttg 77  Q
    ||||||| |||||||||||| ||| ||| ||||||||||| |||| ||||| ||||||||    
T  17213063 atcataatgtgttgtattttctcctttacttgaattgtgagaaattgtatgaagttgttg 17213122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 16226366 - 16226449
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttga 102  Q
    ||||||| |||||||||||| ||  ||| ||| |||||||  ||| |||||||||||||| | ||||||||||  ||||||||||    
T  16226366 atcataatgtgttgtattttctcg-ttacttggattgtgaggaattgtatggagttgttggattatatgatatgattgatgttga 16226449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 19558319 - 19558287
Alignment:
Q  142 aatacatatatgttgattgattgtgatattgtt 174  Q
    ||||||||| |||||||||||||||||||||||    
T  19558319 aatacatatctgttgattgattgtgatattgtt 19558287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 24237873 - 24237765
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    |||||||||| ||||||||| ||| ||| ||| ||| | | ||   |||||||||||||||  ||||  |||||||||||||||| ||||| || ||| |    
T  24237873 atcataaggttttgtattttctcctttacttggattataagaacgtgtatggagttgttgagatataatatatagttgatgttgattaatgtatgtatat 24237774  T
Q  118 taattgatg 126  Q
     ||||||||    
T  24237773 caattgatg 24237765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 33396371 - 33396219
Alignment:
Q  22 taaggtgttgtattttttccattaattg-aattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaa 120  Q
    |||||||||||||||| ||  ||| ||| |||||||| ||||  ||||  ||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  33396371 taaggtgttgtattttctcatttacttggaattgtgagaaataatatgatgttgttgaactatatgatatagttgatgttgaatgttgcatatatgttaa 33396272  T
Q  121 ttgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||||||||||    
T  33396271 ttgattaggatattgtcggtgaatacatatatgttgaatgattgtgatattgt 33396219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 77184 - 77290
Alignment:
Q  67 tggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtg 166  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||   ||||||||||||||||||| ||||||| ||||||||||    
T  77184 tggagttgttaaactatatgatatagttgatggtgattaatgcatatatgttgattgattgtgatattgttggtgaatacacatatgttaattgattgtg 77283  T
Q  167 atattgt 173  Q
    |||||||    
T  77284 atattgt 77290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 20821938 - 20821874
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgt 173  Q
    |||||||||| |||||| | |||| |||||||||||||||||||||| |||||||||||||||||    
T  20821938 catatatgttgattgattatgataatgttggtgaatacatatatgttaattgattgtgatattgt 20821874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 20822062 - 20821910
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||| |||  ||||||| ||| ||| ||| ||||||| |||| || ||  ||||||||| ||||||||| ||||||||| |     || ||||||||    
T  20822062 atcataatgtgaagtattttctcctttatttggattgtgagaaatagtgtgatgttgttgaattatatgataaagttgatgtagg----tgaatatatgt 20821967  T
Q  118 taattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    | ||||||   ||||| |||||||| |||||||||||||||||||| ||||| ||||    
T  20821966 tgattgattgtgatatggttggtgagtacatatatgttgattgattatgataatgtt 20821910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 46144760 - 46144659
Alignment:
Q  18 atcataaggtgttgtattttt-tccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatg 116  Q
    ||||||||||||||||| ||  ||| ||| ||| ||| ||| || | ||||||||||||||||||||||||||||||||| || || ||||| ||| |||    
T  46144760 atcataaggtgttgtatgttcctcctttacttgtattatgagaagttgtatggagttgttgaactatatgatatagttgaagtggattaatgaatacatg 46144661  T
Q  117 tt 118  Q
    ||    
T  46144660 tt 46144659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 21224229 - 21224122
Alignment:
Q  47 ttgaattgtgaaaaatggtatggagttgttgaactata-tgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaata 145  Q
    ||||||||||| |||| |||||||||||||||  | || |||| |||||| |||||| || | |||||| | |||||||||  |||||||||||||| |     
T  21224229 ttgaattgtgagaaattgtatggagttgttgagatgtaatgatgtagttgttgttgattattacatataagctaattgatggtgatattgttggtgagtg 21224130  T
Q  146 catatatg 153  Q
    ||||||||    
T  21224129 catatatg 21224122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 40437479 - 40437579
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    |||||||||| ||||||||  ||| ||| ||| ||||||| |||| ||  | ||||||||||||||| |||||| |||| ||||| ||||| ||| ||||    
T  40437479 atcataaggtattgtatttcctcctttacttggattgtgagaaattgtgcgaagttgttgaactataggatataattgaagttgattaatgaatacatgt 40437578  T
Q  118 t 118  Q
    |    
T  40437579 t 40437579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 49998526 - 49998602
Alignment:
Q  20 cataaggtgttgtattttt-tccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttg 95  Q
    ||||||||||||||||||  ||| ||| ||| ||| ||| || | ||||| ||||||||||||||||||||||||||    
T  49998526 cataaggtgttgtattttcctcctttacttgtattatgagaagttgtatgtagttgttgaactatatgatatagttg 49998602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 20821901 - 20821836
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||   |||||||| ||||||| |||||||||| | |||| ||||| |||||    
T  20821901 catatatgttaattgattgtgatattgtcggtgaatgcatatatgttaagtgatggtgattttgtt 20821836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 77226 - 77254
Alignment:
Q  146 catatatgttgattgattgtgatattgtt 174  Q
    |||||||||||||||||||||||||||||    
T  77226 catatatgttgattgattgtgatattgtt 77254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 34 - 174
Target Start/End: Original strand, 14075 - 14215
Alignment:
Q  34 ttttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatat 133  Q
    |||| ||| ||| ||| ||||||| |||| || ||  ||||||||| |||||||||||||||||||||   ||| |||||||||| ||||||   |||||    
T  14075 ttttctcctttatttggattgtgagaaatagtgtgatgttgttgaattatatgatatagttgatgttggtgaatacatatatgttgattgattgtgatat 14174  T
Q  134 tgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
     |||||||||||||||||||||||| |||||||||||||||    
T  14175 ggttggtgaatacatatatgttgatcgattgtgatattgtt 14215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 14207 - 14248
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtgatat 170  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  14207 gatattgttggtgaatacatatatgttaattgattgtgatat 14248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 60; Significance: 8e-26; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 47 - 174
Target Start/End: Original strand, 21208 - 21335
Alignment:
Q  47 ttgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatac 146  Q
    ||||||||||| |||| |||||  ||||| ||| ||||||||| ||| ||||||||  ||| |||||||||| ||||||   ||||||||| || |||||    
T  21208 ttgaattgtgagaaatagtatgatgttgtggaattatatgataaagtcgatgttgatgaatacatatatgttgattgattgtgatattgttagtaaatac 21307  T
Q  147 atatatgttgattgattgtgatattgtt 174  Q
    ||||||||||||||||||||||||||||    
T  21308 atatatgttgattgattgtgatattgtt 21335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 21307 - 21372
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||||| ||||||   |||||||||| ||| ||||||||||||||||||||| |||||||||    
T  21307 catatatgttgattgattgtgatattgttgatgagtacatatatgttgattgattgcgatattgtt 21372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 21344 - 21405
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatat 170  Q
    |||||||||| ||||||   |||||||||||||| |||||||||||||||||||||| ||||    
T  21344 catatatgttgattgattgcgatattgttggtgagtacatatatgttgattgattgtaatat 21405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 11656 - 11499
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttga-tgttgaataatgcatatatg 116  Q
    ||||||||||||| |||||| ||| ||| ||| ||||||| |||  ||||| |||||||||  ||||| |||||||||| |||||| |||||||||||||    
T  11656 atcataaggtgttttattttctcctttacttggattgtgagaaagtgtatgaagttgttgagttatattatatagttgaatgttgattaatgcatatatg 11557  T
Q  117 ttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    || | |||||  |||||||| ||||||| |||||||||| | |||| ||||| |||||    
T  11556 ttgactgatggtgatattgtcggtgaatgcatatatgttaagtgatggtgattttgtt 11499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 12214 - 12284
Alignment:
Q  47 ttgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgt 117  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  12214 ttgaattgtgagaaattgtatggaattgttgaactatatgatatagttgatgttgattaatgcatatatgt 12284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 173
Target Start/End: Original strand, 247079 - 247201
Alignment:
Q  51 attgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatatatgttaattgatgaggatattgttggtgaatacatat 150  Q
    ||||||| |||| |||||  ||||||||| | ||||||  ||||||| |||   ||| |||||||||| ||||||   ||||| ||||||||||||||||    
T  247079 attgtgagaaatagtatgatgttgttgaattttatgatgaagttgatattggtgaatacatatatgttgattgatagtgatatggttggtgaatacatat 247178  T
Q  151 atgttgattgattgtgatattgt 173  Q
    ||||| |||||||||||||||||    
T  247179 atgttaattgattgtgatattgt 247201  T

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Target: scaffold0009 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 255551 - 255614
Alignment:
Q  111 tatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||||| ||||||   |||||||||||||||||||||||||| |||||||||||||||||||    
T  255551 tatatgttgattgattttgatattgttggtgaatacatatatgtggattgattgtgatattgtt 255614  T

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Target: scaffold0009; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 255643 - 255688
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtgatattgtt 174  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  255643 gatatttttggtgaatacatatatgttgattgattgtgatattgtt 255688  T

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Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 255660 - 255720
Alignment:
Q  109 catatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtgata 169  Q
    |||||||||| ||||||   |||||||||||||||||||||||| || |||| ||||||||    
T  255660 catatatgttgattgattgtgatattgttggtgaatacatatatcttaattggttgtgata 255720  T

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Target: scaffold0009; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 98348 - 98385
Alignment:
Q  129 gatattgttggtgaatacatatatgttgattgattgtg 166  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  98348 gatattgttggtgaatatatatatgttgaatgattgtg 98385  T

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Target: scaffold0057 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 4929 - 4839
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatg 108  Q
    |||||||||||||||||||| ||| ||| ||| ||||||| |||  ||||| ||||||||| |||||| ||||||||||| |||| |||||    
T  4929 atcataaggtgttgtattttctcctttacttggattgtgagaaagtgtatgaagttgttgagctatattatatagttgatattgattaatg 4839  T

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Target: scaffold0601 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 2197 - 2280
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttg 101  Q
    |||||||||||||||||||| ||| ||| ||| ||||||| ||||  ||||  ||||||||| ||||||||| ||| |||||||    
T  2197 atcataaggtgttgtattttctcctttacttggattgtgagaaataatatgatgttgttgaattatatgataaagtcgatgttg 2280  T

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Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 8322 - 8420
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttg-atgttgaataatgcatatatg 116  Q
    |||||||||||||||||||| ||| ||| ||| ||||||| |||  ||||| ||||||| | |||||| ||||||||| ||||||| ||||| |||||||    
T  8322 atcataaggtgttgtattttctcctttacttggattgtgagaaagtgtatgaagttgtt-agctatattatatagttgaatgttgattaatgtatatatg 8420  T

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Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 8429 - 8485
Alignment:
Q  110 atatatgttaattgatgaggatattgttggtgaatacatatatgttgattgattgtg 166  Q
    ||||||||| ||||||   |||||||||| || ||||||||||||| ||||||||||    
T  8429 atatatgtttattgattgtgatattgttgatggatacatatatgttaattgattgtg 8485  T

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Target: scaffold0088 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 44793 - 44900
Alignment:
Q  21 ataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatat--agttgatgttgaataatgcatatatgtt 118  Q
    ||||||||||||||||| |||  || ||| | ||||| |||  |||| |||||||||| |||||| ||||  |||||||||||| ||||| |||||| |     
T  44793 ataaggtgttgtattttctcctctacttggaatgtgagaaagtgtatagagttgttgagctatattatatatagttgatgttgattaatgtatatatatc 44892  T
Q  119 aattgatg 126  Q
    ||||||||    
T  44893 aattgatg 44900  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 34645 - 34720
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagtt 94  Q
    |||||||||||||||||||| ||| ||| ||| | ||||| |||  ||||||||||||||| |||||| ||||||||    
T  34645 atcataaggtgttgtattttctcc-ttacttggaatgtgagaaagtgtatggagttgttgagctatattatatagtt 34720  T

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Target: scaffold0153 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 850 - 755
Alignment:
Q  18 atcataaggtgttgtattttttccattaattgaattgtgaaaaatggtatggagttgttgaactatatgatatagttgatgttgaataatgcatat 113  Q
    ||||||| |||||||||||| ||| ||| ||| ||||||| |||    |||  |||||||||| ||| ||||||||| ||||||| ||||||||||    
T  850 atcataatgtgttgtattttctcctttacttggattgtgagaaagtacatgatgttgttgaacgataggatatagtttatgttgattaatgcatat 755  T

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