View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_624 (Length: 201)

Name: NF11737A_low_624
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_624
NF11737A_low_624
[»] chr2 (4 HSPs)
chr2 (109-175)||(10524286-10524352)
chr2 (110-172)||(39338695-39338757)
chr2 (109-166)||(17116708-17116765)
chr2 (115-172)||(387363-387420)
[»] chr5 (4 HSPs)
chr5 (109-175)||(34378284-34378350)
chr5 (109-172)||(18593432-18593495)
chr5 (109-169)||(698553-698613)
chr5 (113-172)||(7161849-7161908)
[»] chr3 (15 HSPs)
chr3 (109-169)||(47235890-47235950)
chr3 (109-156)||(34475585-34475632)
chr3 (109-169)||(17551144-17551204)
chr3 (110-170)||(20611973-20612033)
chr3 (109-170)||(2392335-2392396)
chr3 (109-170)||(2394099-2394160)
chr3 (110-172)||(19176693-19176755)
chr3 (109-166)||(53248096-53248153)
chr3 (109-157)||(30352270-30352318)
chr3 (109-156)||(31483088-31483135)
chr3 (109-170)||(43012566-43012627)
chr3 (111-172)||(23328181-23328243)
chr3 (123-176)||(45398980-45399034)
chr3 (111-172)||(9583886-9583946)
chr3 (109-170)||(45164046-45164107)
[»] chr7 (12 HSPs)
chr7 (109-172)||(31971963-31972026)
chr7 (111-175)||(3419486-3419550)
chr7 (109-172)||(44353392-44353456)
chr7 (111-177)||(3867300-3867366)
chr7 (110-172)||(47325715-47325777)
chr7 (111-175)||(3419227-3419291)
chr7 (109-172)||(10244371-10244434)
chr7 (111-169)||(38306453-38306511)
chr7 (124-172)||(5860132-5860180)
chr7 (110-154)||(25161018-25161062)
chr7 (109-175)||(37795175-37795241)
chr7 (109-168)||(40726334-40726392)
[»] chr8 (11 HSPs)
chr8 (109-169)||(9519692-9519752)
chr8 (109-173)||(16457304-16457368)
chr8 (109-172)||(20138615-20138679)
chr8 (110-177)||(31207192-31207259)
chr8 (110-169)||(32066125-32066184)
chr8 (109-172)||(41893231-41893294)
chr8 (109-170)||(24995223-24995284)
chr8 (110-169)||(34388836-34388895)
chr8 (109-172)||(37986687-37986750)
chr8 (112-169)||(12898107-12898164)
chr8 (109-156)||(22773820-22773867)
[»] chr6 (3 HSPs)
chr6 (109-168)||(10542025-10542084)
chr6 (111-175)||(14663263-14663327)
chr6 (109-172)||(3117682-3117745)
[»] chr1 (10 HSPs)
chr1 (109-170)||(24449759-24449820)
chr1 (111-168)||(46692650-46692707)
chr1 (109-168)||(5459354-5459413)
chr1 (110-156)||(6804745-6804791)
chr1 (123-172)||(6764224-6764273)
chr1 (109-170)||(41920648-41920709)
chr1 (109-172)||(5389251-5389313)
chr1 (109-153)||(30685753-30685797)
chr1 (129-169)||(31585608-31585648)
chr1 (110-172)||(46814297-46814360)
[»] chr4 (7 HSPs)
chr4 (115-172)||(30964626-30964683)
chr4 (110-169)||(8255219-8255278)
chr4 (110-169)||(8268637-8268696)
chr4 (110-169)||(8705974-8706033)
chr4 (109-172)||(30167394-30167456)
chr4 (109-165)||(20464786-20464842)
chr4 (134-175)||(4305910-4305951)
[»] scaffold0343 (1 HSPs)
scaffold0343 (109-172)||(5895-5958)


Alignment Details
Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 10524352 - 10524286
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaac 175  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10524352 ggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaactcccaaac 10524286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 39338695 - 39338757
Alignment:
Q  110 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||||||| || |||||||||||||||||||||||||||||||||  ||||||||||||||    
T  39338695 gtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactccca 39338757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 17116708 - 17116765
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaa 166  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||  ||||||||    
T  17116708 ggtatccaccaccgcccatcgtcattactcacccacaaagaacaccctcaaaataaaa 17116765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 387420 - 387363
Alignment:
Q  115 caccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||||| |||||||||||| |||||| |||||||||||||  ||||||||||||||    
T  387420 caccaccgcccatcgtcactattcacccccaaagaacaccctcaaaataaaactccca 387363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 34378350 - 34378284
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaac 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||    
T  34378350 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcaaac 34378284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 18593495 - 18593432
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  18593495 ggtatccaccaccgcccatcgtcactactcacccacaaagaacatcctccaaataaaactccca 18593432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 698613 - 698553
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactc 169  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||| ||||||||||||    
T  698613 ggtatccaccatcgccgatcgtcactactcacccacaaagaacaccctccaaataaaactc 698553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 7161849 - 7161908
Alignment:
Q  113 tccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||||||  ||| ||||||||||||||| ||||||||||| |  ||||||||||||||    
T  7161849 tccaccaccacccaacgtcactactcacccccaaagaacaccatcaaaataaaactccca 7161908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 47235950 - 47235890
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactc 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  47235950 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactc 47235890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 34475585 - 34475632
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 156  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  34475585 ggtatccaccaccgcccatcgtcactactcacccacaaagaacaccct 34475632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 17551204 - 17551144
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactc 169  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||  |||||||||||    
T  17551204 ggtaaccaccaccgcccatcgtcactactcaccgacaaagaacaccctcaaaataaaactc 17551144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 20612033 - 20611973
Alignment:
Q  110 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcc 170  Q
    |||||||||| || |||||||||||||||||||||||||||||||||   |||||||||||    
T  20612033 gtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcagaataaaactcc 20611973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 2392335 - 2392396
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctac-aaataaaactcc 170  Q
    |||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  2392335 ggtatccaccaccgcccatcgtcactactcacccacaaataaca-cctacaaaataaaactcc 2392396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 2394099 - 2394160
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctac-aaataaaactcc 170  Q
    |||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  2394099 ggtatccaccaccgcccatcgtcactactcacccacaaataaca-cctacaaaataaaactcc 2394160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 19176755 - 19176693
Alignment:
Q  110 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||  ||||||||| ||||    
T  19176755 gtatccaccaccatccatcgtcactactcacccctaaagaacaccctcaaaataaaacaccca 19176693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 53248153 - 53248096
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaa 166  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| ||  ||||||||    
T  53248153 ggtaaccaccaccgcccatcgtcactactcacccacaaagaacactctcaaaataaaa 53248096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 30352270 - 30352318
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacacccta 157  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||||    
T  30352270 ggtatccaccaccacccatcgtcactactcatccacaaagaacacccta 30352318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 31483135 - 31483088
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 156  Q
    |||||||||||| || ||||||||||||| ||||||||||||||||||    
T  31483135 ggtatccaccactgttcatcgtcactactaacccacaaagaacaccct 31483088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 43012627 - 43012566
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcc 170  Q
    |||||||||| |||||||||| |||||||||||  |||||||||||||  || |||||||||    
T  43012627 ggtatccacccccgtccatcgccactactcacctccaaagaacaccctcaaattaaaactcc 43012566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 23328181 - 23328243
Alignment:
Q  111 tatccaccaccgtccatcgtcactactcacccacaaagaacacc-ctacaaataaaactccca 172  Q
    ||||||| |||  ||||||||||||||||||| ||||||||||| ||  ||||||||||||||    
T  23328181 tatccacaaccacccatcgtcactactcacccccaaagaacaccactcaaaataaaactccca 23328243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 45399034 - 45398980
Alignment:
Q  123 tccatcgtcactactcacccacaaagaacaccctac-aaataaaactcccaaact 176  Q
    |||||||||||||||||||| ||| |||||||| || ||||| ||||||||||||    
T  45399034 tccatcgtcactactcacccccaacgaacaccccacaaaatagaactcccaaact 45398980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 9583886 - 9583946
Alignment:
Q  111 tatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||||||||| | |||||||||||||| || ||||||||| |||  ||||||||||||||    
T  9583886 tatccaccaccgcctatcgtcactactca-ccgcaaagaacatcctcaaaataaaactccca 9583946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 45164107 - 45164046
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcc 170  Q
    ||||| || ||||| |||||||||||| ||||| ||||| ||||||||  ||||||||||||    
T  45164107 ggtattcatcaccgcccatcgtcactaatcacctacaaataacaccctcaaaataaaactcc 45164046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 31971963 - 31972026
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31971963 ggtatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaactccca 31972026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 3419486 - 3419550
Alignment:
Q  111 tatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaac 175  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||  |||||||||||||||||    
T  3419486 tatccaccaccgttcatcgtcactactcactcacaaagaacacccttaaaataaaactcccaaac 3419550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 44353392 - 44353456
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct-acaaataaaactccca 172  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  44353392 ggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaactccca 44353456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 3867366 - 3867300
Alignment:
Q  111 tatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaactc 177  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  |||||||||| ||| ||||    
T  3867366 tatccaccaccgtccatcgtcactactcacccccaaagaacaccctcaaaataaaacttccatactc 3867300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 47325715 - 47325777
Alignment:
Q  110 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    ||||||| || || |||||||||||||||||||||||||||||||||  ||||||||||||||    
T  47325715 gtatccatcatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactccca 47325777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 3419227 - 3419291
Alignment:
Q  111 tatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaac 175  Q
    ||||||||||||| |||| ||||||||||| |||||| ||||||||  |||||||||||||||||    
T  3419227 tatccaccaccgttcatcatcactactcactcacaaaaaacacccttaaaataaaactcccaaac 3419291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 10244434 - 10244371
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    ||||||||||| || |||||||||||||||||||||||||| |||||| ||| ||||| |||||    
T  10244434 ggtatccaccatcgcccatcgtcactactcacccacaaagaccaccctccaactaaaaatccca 10244371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 38306511 - 38306453
Alignment:
Q  111 tatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactc 169  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||  |||||||||||    
T  38306511 tatccaccaccacccatcgtcactactcacctacaaagaacaccctcaaaataaaactc 38306453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 5860132 - 5860180
Alignment:
Q  124 ccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  5860132 ccatcgtcactactcatccacaaagaacaccctgaaaataaaactccca 5860180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 25161062 - 25161018
Alignment:
Q  110 gtatccaccaccgtccatcgtcactactcacccacaaagaacacc 154  Q
    |||||||||| || |||||||||||||||||||||||||||||||    
T  25161062 gtatccaccaacgcccatcgtcactactcacccacaaagaacacc 25161018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 37795241 - 37795175
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaac 175  Q
    |||||||||||||| ||||| | |||||| | ||||||||||||||||  ||||||||||| |||||    
T  37795241 ggtatccaccaccgcccatcattactacttaaccacaaagaacaccctcaaaataaaactctcaaac 37795175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 40726334 - 40726392
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaact 168  Q
    |||||||||||||| | ||| |||||||||| ||||||||||||||||  ||||||||||    
T  40726334 ggtatccaccaccgcctatcatcactactca-ccacaaagaacaccctcaaaataaaact 40726392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 9519752 - 9519692
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactc 169  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  9519752 ggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactc 9519692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 16457304 - 16457368
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaa 173  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||    
T  16457304 ggtatccaccaccgtccatcgtcactactcacccataaagaccaccctgaaaataaaactcccaa 16457368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 20138679 - 20138615
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct-acaaataaaactccca 172  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  20138679 ggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaactccca 20138615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 31207192 - 31207259
Alignment:
Q  110 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaactc 177  Q
    |||||||||| || |||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  31207192 gtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccatactc 31207259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 32066125 - 32066184
Alignment:
Q  110 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactc 169  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  32066125 gtatccaccaccgcccatcgtcactactcactcacaaagaacaccctccaaataaaactc 32066184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 41893231 - 41893294
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  41893231 ggtatccaccaccgaccatcgtcactactcacccacaaagaacaccctgaaaatagaactccca 41893294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 24995223 - 24995284
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcc 170  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||    
T  24995223 ggtatccaccaccgcccatcgtcactactcacgcacaaagaacaccctcaaaataaaactcc 24995284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 34388836 - 34388895
Alignment:
Q  110 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactc 169  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||  |||||||||||    
T  34388836 gtatccaccaccgcctatcgtcactactcacccacaaagaacaccctcaaaataaaactc 34388895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 37986687 - 37986750
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||| ||||||  ||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  37986687 ggtatctaccaccacccatcgtcattactcacccacaaagaacaccctccaaataaaactccca 37986750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 12898107 - 12898164
Alignment:
Q  112 atccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactc 169  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  12898107 atccacaaccgttcatcgtcactactcacccacaaagaacaccctcaaaataaaactc 12898164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 22773867 - 22773820
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 156  Q
    |||| ||||||| | |||||||||||||||||||||||||||||||||    
T  22773867 ggtaaccaccactgcccatcgtcactactcacccacaaagaacaccct 22773820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 10542084 - 10542025
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaact 168  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||    
T  10542084 ggtatccaccaccgcccatcgtcactactcacccacaaagaataccctccaaataaaact 10542025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 14663327 - 14663263
Alignment:
Q  111 tatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaac 175  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||  |||||||||||||||||    
T  14663327 tatccaccaccgcccatcgtcactactcacccgcaaagaacatcctcaaaataaaactcccaaac 14663263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 3117745 - 3117682
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||| |||||||||  ||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  3117745 ggtaaccaccaccgctcatcgtctctacttacccacaaagaacaccctataaataaaactccca 3117682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 24449759 - 24449820
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcc 170  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||||||    
T  24449759 ggtatccaccaccgcccatcgtcactactcacccacaaataacaccctcaaaataaaactcc 24449820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 46692650 - 46692707
Alignment:
Q  111 tatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaact 168  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  46692650 tatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaact 46692707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 5459413 - 5459354
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaact 168  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |  ||||||||||    
T  5459413 ggtatccaccaccgcccatcgtcactactcacccacaaagaacaccatcaaaataaaact 5459354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 6804791 - 6804745
Alignment:
Q  110 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 156  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  6804791 gtatccaccaccgcccatcgtcactcctcacccacaaagaacaccct 6804745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 6764224 - 6764273
Alignment:
Q  123 tccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  6764224 tccatcgtcactactcacccacaaagaacatcctgaaaataaaactccca 6764273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 41920709 - 41920648
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcc 170  Q
    ||||| |||||||| | |||||||||||||||||||||| ||||||||  ||||||||||||    
T  41920709 ggtattcaccaccgcctatcgtcactactcacccacaaaaaacaccctcaaaataaaactcc 41920648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 5389251 - 5389313
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||||||||||| |||||||||||||||||  || |||||||||||  ||||||||||||||    
T  5389251 ggtatccaccaccgcccatcgtcactactcacttac-aagaacaccctcaaaataaaactccca 5389313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 30685753 - 30685797
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacac 153  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||||    
T  30685753 ggtatccaccaccgcccatcttcactacacacccacaaagaacac 30685797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 31585608 - 31585648
Alignment:
Q  129 gtcactactcacccacaaagaacaccctacaaataaaactc 169  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  31585608 gtcactactcacccacaaagaacaccctcaaaataaaactc 31585648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 46814297 - 46814360
Alignment:
Q  110 gtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctacaaataaaactccca 172  Q
    |||||||| |||||||||||||||||||||||  |||| |||| ||||  ||||||||||||||    
T  46814297 gtatccacaaccgtccatcgtcactactcacctccaaataacacccctcgaaataaaactccca 46814360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 30964683 - 30964626
Alignment:
Q  115 caccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||||| ||||| |||||||||||||||||||||||||||  ||||||||||||||    
T  30964683 caccaccgcccatcatcactactcacccacaaagaacaccctcaaaataaaactccca 30964626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 8255278 - 8255219
Alignment:
Q  110 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactc 169  Q
    |||||||||||   |||||||||||||||||||||||||||||||||  |||||||||||    
T  8255278 gtatccaccacatcccatcgtcactactcacccacaaagaacaccctcaaaataaaactc 8255219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 8268696 - 8268637
Alignment:
Q  110 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactc 169  Q
    |||||||||||   |||||||||||||||||||||||||||||||||  |||||||||||    
T  8268696 gtatccaccacatcccatcgtcactactcacccacaaagaacaccctcaaaataaaactc 8268637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 8705974 - 8706033
Alignment:
Q  110 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactc 169  Q
    ||||||||||| | ||||||||||||| |||||||||||||||||||  |||||||||||    
T  8705974 gtatccaccactgcccatcgtcactacccacccacaaagaacaccctcaaaataaaactc 8706033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 30167394 - 30167456
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||||||||||| ||| |||||| ||||||||||||||||||||||  ||||||||||||||    
T  30167394 ggtatccaccaccg-ccaacgtcaccactcacccacaaagaacaccctcaaaataaaactccca 30167456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 20464842 - 20464786
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaa 165  Q
    |||||||||||||| ||||||||||||||||||| |||| ||||||||  |||||||    
T  20464842 ggtatccaccaccgcccatcgtcactactcacccccaaataacaccctcaaaataaa 20464786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 4305951 - 4305910
Alignment:
Q  134 tactcacccacaaagaacaccctacaaataaaactcccaaac 175  Q
    |||||||||||||||| ||||||  |||||||||||||||||    
T  4305951 tactcacccacaaagatcaccctgaaaataaaactcccaaac 4305910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 5958 - 5895
Alignment:
Q  109 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca 172  Q
    |||||||||||||  ||||| |||||||||||||||||| ||||||||  ||||||||||||||    
T  5958 ggtatccaccacctcccatcatcactactcacccacaaaaaacaccctcaaaataaaactccca 5895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University