View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_67 (Length: 418)
Name: NF11737A_low_67
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_67 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 15 - 418
Target Start/End: Complemental strand, 38802035 - 38801632
Alignment:
| Q |
15 |
acatcaagattcccagatgacagggtttctgaatctcgggatgcagaattaccaccagatgaccacatagagacaaaatcgccagattgtggtggcctta |
114 |
Q |
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| T |
38802035 |
acatcaagattcccagatgacagggtttctgaatctcgggatgcagaattaccaccagatgaccacatagagacaaaatcgccagattgtggtggcctta |
38801936 |
T |
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| Q |
115 |
caaaaagaggatgttgaaaaccatttatttcagaagcaggcctctcgaaggaagacctacctgtttggcgacgacgttcaaaactctgaagacgaaaaag |
214 |
Q |
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| T |
38801935 |
caaaaagaggatgttgaaaaccatttatttcagaagcaggcctctcgaaggaagacctacctgtttggcgacgacgttcaaaactctgaagacgaaaaag |
38801836 |
T |
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| Q |
215 |
gtcatccacattaaccccttcaaaaggttcagcagacacatctataaggccaccagctgttccatgttgcccaagtatctgcaagtgatccaatccatct |
314 |
Q |
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| T |
38801835 |
gtcatccacattaaccccttcaaaaggttcagcagacaaatctataaggccaccagctgttctatgttgcccaagtatctgcaagtgatccaatccatct |
38801736 |
T |
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| Q |
315 |
agagcttccctccatctcacctctatgacgcgattctcatgaaaatcatcgtcgtcttcatcaatcatctcattattgtattcatctcccgtgtcagcgt |
414 |
Q |
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| T |
38801735 |
agagcttccctccatctcacctctatgacgcgattctcatgaaaatcatcgtcgtcttcatcaatcatctcattattgtattcatcccccgtgtcagcgt |
38801636 |
T |
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| Q |
415 |
catc |
418 |
Q |
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| T |
38801635 |
catc |
38801632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 22 - 399
Target Start/End: Complemental strand, 38780824 - 38780447
Alignment:
| Q |
22 |
gattcccagatgacagggtttctgaatctcgggatgcagaattaccaccagatgaccacatagagacaaaatcgccagattgtggtggccttacaaaaag |
121 |
Q |
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|||||||||||||| ||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
38780824 |
gattcccagatgactgggtttccgaatcccgggatgcagaaataccacctgatgaccacatagagacaaaatcgccagattgcggtggccttacaagaag |
38780725 |
T |
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| Q |
122 |
aggatgttgaaaaccatttatttcagaagcaggcctctcgaaggaagacctacctgtttggcgacgacgttcaaaactctgaagacgaaaaaggtcatcc |
221 |
Q |
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| T |
38780724 |
aggatgttgaaaaccatttatttcagaaacagatctctcgaaggaagatctacctgtctggcggcgacgttcaaaactttgaagacgaaaaaagtcatca |
38780625 |
T |
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| Q |
222 |
acattaaccccttcaaaaggttcagcagacacatctataaggccaccagctgttccatgttgcccaagtatctgcaagtgatccaatccatctagagctt |
321 |
Q |
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||| |||||| |||||||||||| ||| |||||| |||||||||||| | |||||| |||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
38780624 |
acagtaacccgttcaaaaggttcggcaaccacatccataaggccaccaccagttccaggttgcccaagtatctggaagtgatccaatccatcaagagctt |
38780525 |
T |
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| Q |
322 |
ccctccatctcacctctatgacgcgattctcatgaaaatcatcgtcgtcttcatcaatcatctcattattgtattcat |
399 |
Q |
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|||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| | || | ||||||||| |
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| T |
38780524 |
ccctccatctcacctcaatgatgtgattctcatgaaaatcatcgtcgtcttcatcaatcatttgatcaatgtattcat |
38780447 |
T |
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