View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_68 (Length: 418)
Name: NF11737A_low_68
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_68 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 22 - 402
Target Start/End: Complemental strand, 13385274 - 13384872
Alignment:
| Q |
22 |
gttaggaggtgtgaatcttgtttcccacctgtgttacttttcgtaacaccgccgttaccgtttcgattaatcattccatttctttgttattagtgttgtt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
13385274 |
gttaggaggtgtgaatcttgtttcccacctgtgttacttttcgtaacaccaccgttaccgtttcgataaatcatttcatttctttgttattagtgttgtt |
13385175 |
T |
|
| Q |
122 |
cttcttcttttgcttttagggtttcattccctggtattgttcttcgacctgttgggaatttcaggagcaattatgattatcattaccaaaccctaaaaga |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13385174 |
gttcttcttttgcttttagggtttcattccctagtattgttcttcgacatgttgggaatttcaggagcagttatgattatcattaccaaaccctaaaaga |
13385075 |
T |
|
| Q |
222 |
taatgttgatat----------------------gttgaagcttgttcaattgtatctagtaatttaattttagagaatttaacgttaatgaggatgttt |
299 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| || | |||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
13385074 |
taatgttgatatgttttgaagcttgttgaattatgttgaagtttgttcaattgcatatggtaattcaattttagagaatttaatgttaatgaggatgttt |
13384975 |
T |
|
| Q |
300 |
ttgcaaacggttcaattgagcttttgagacaaagtggaattgatttcaggaagaataatcaagatggtatcgatgctaggcgtttcggtgagcttttgat |
399 |
Q |
| |
|
| ||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13384974 |
tcgcaaatgattcaattgagcttttgagacaaagtggaattgatttcaagaagaataatcaagatggtatcgatgctaggcgtttcggtgagcttttgat |
13384875 |
T |
|
| Q |
400 |
gtc |
402 |
Q |
| |
|
||| |
|
|
| T |
13384874 |
gtc |
13384872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 35712920 - 35713090
Alignment:
| Q |
22 |
gttaggaggtgtgaatcttgtttcccacctgtgttacttttcgtaacaccgccgttaccgtttcgattaatcattccatttctttgttattagtgttgtt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
35712920 |
gttaggaggtgtgaatcttgtttcccacctgtgttacttttcgtaacaccgccgttaccgtttcgatcaatcctttcatttctttgttattagtgttgtt |
35713019 |
T |
|
| Q |
122 |
cttcttcttttgcttttagggtttcattccctggtattgttcttcgacctgttgggaatttcaggagcaat |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35713020 |
gttcttcttttgcttttagggtttcattccctggtattgttcttcgacctgttgggaatttcaggagcaat |
35713090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 192 - 402
Target Start/End: Original strand, 35716687 - 35716896
Alignment:
| Q |
192 |
ttatgattatcattaccaaaccctaaaagataatgttgatatgttgaagcttgttcaattgtatctagtaatttaattttagagaatttaacgttaatga |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||||||||||| |||||||| |
|
|
| T |
35716687 |
ttatgattatcattaccaaaccctaaaagataatgttgatatgttgaagcttgttcaattgtacctggtaattcaagtttagagaatttaatgttaatga |
35716786 |
T |
|
| Q |
292 |
ggatgtttttgcaaacggttcaattgagcttttgagacaaagtggaattgatttcaggaagaataatcaagatggtatcgatgctaggcgtttcggtgag |
391 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
35716787 |
ggatgcttttgcaaatgattcaattgagcttttgagacaaagtggaattgatttcaagaagaataa-aaagatggtatcgatgcttggtgtttcggtgac |
35716885 |
T |
|
| Q |
392 |
cttttgatgtc |
402 |
Q |
| |
|
||||||||||| |
|
|
| T |
35716886 |
cttttgatgtc |
35716896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 250 - 402
Target Start/End: Complemental strand, 816969 - 816817
Alignment:
| Q |
250 |
ttgtatctagtaatttaattttagagaatttaacgttaatgaggatgtttttgcaaacggttcaattgagcttttgagacaaagtggaattgatttcagg |
349 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
816969 |
ttgtatctggcaattcaattttagagaatttaatgttaacgaggatgtttttgcaaatgattcaattgagcttttgagacaaagtggaattgatttcaag |
816870 |
T |
|
| Q |
350 |
aagaataatcaagatggtatcgatgctaggcgtttcggtgagcttttgatgtc |
402 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
816869 |
aagaataatgaagatggtatcgatgctaggcgtttcggtgagcttttgatgtc |
816817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 147 - 252
Target Start/End: Complemental strand, 817134 - 817029
Alignment:
| Q |
147 |
attccctggtattgttcttcgacctgttgggaatttcaggagcaattatgattatcattaccaaaccctaaaagataatgttgatatgttgaagcttgtt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
817134 |
attccctggtattgttcttcgacctgttgggaatttcaagagcaattatgattatcattaccaaaccctaaaagataatgttgatatgttaaagcttatt |
817035 |
T |
|
| Q |
247 |
caattg |
252 |
Q |
| |
|
|||||| |
|
|
| T |
817034 |
caattg |
817029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 23485504 - 23485628
Alignment:
| Q |
22 |
gttaggaggtgtgaatcttgtttcccacctgtgttacttttcgtaacaccgccgttaccgtttcgattaatcattccatttctttgttattag---tgtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| |||||| ||| |||| |
|
|
| T |
23485504 |
gttaggaggtgtgaatcttgtttcccacctgtgttacttttcgtaacaccgccgttactgtttc----aatcatttcatttc-ttgttagtagtgttgtt |
23485598 |
T |
|
| Q |
119 |
gttcttcttcttttgcttttagggtttcat |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
23485599 |
gttcttcttcttttgcttttagggtttcat |
23485628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University